Fish Spatial Expression Database

GENE ID: ENSDARG00000020128

Symbol	Location	Gene type	Genome version	Species
--	--	--	GRCz11	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000020128 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000003520	tbc1d14	7: 39679944 ~ 39705763 (+)
ENSDARG00000070100	si:ch211-168d1.3	7: 7279903 ~ 7373059 (+)
ENSDARG00000028857	sgsm1a	5: 20030414 ~ 20093196 (+)
ENSDARG00000077040	NA	6: 6822592 ~ 6845993 (+)
ENSDARG00000015807	rab22a	6: 49551614 ~ 49580086 (+)
ENSDARG00000038855	chmp5a	2: 30894595 ~ 30901120 (+)
ENSDARG00000052419	ankrd12	2: 54696042 ~ 54786748 (+)
ENSDARG00000043012	napgb	2: 54364273 ~ 54387550 (-)
ENSDARG00000060477	vps8	1: 30083578 ~ 30310689 (+)
ENSDARG00000078215	rbsn	8: 53150972 ~ 53169445 (-)
ENSDARG00000090183	gapvd1	8: 34341885 ~ 34427371 (-)
ENSDARG00000077618	rin3	17: 33453689 ~ 33486030 (+)
ENSDARG00000071304	tbc1d2	14: 6287871 ~ 6329931 (+)
ENSDARG00000062868	eea1	18: 15841449 ~ 15881931 (+)
ENSDARG00000012040	rnf19a	19: 12030832 ~ 12078583 (-)
ENSDARG00000015968	rabgef1l	15: 1718668 ~ 1733259 (-)
ENSDARG00000061024	rabggta	23: 1702624 ~ 1726560 (+)
ENSDARG00000079095	rin1a	21: 27356768 ~ 27362938 (-)
ENSDARG00000075376	sgsm1b	10: 1638876 ~ 1675362 (+)
ENSDARG00000014430	rabgef1	10: 32854901 ~ 32880298 (-)
ENSDARG00000060096	tbc1d10ab	10: 8534750 ~ 8576218 (+)
ENSDARG00000006617	napga	24: 947473 ~ 982443 (-)
ENSDARG00000029710	lrrc30a	24: 41678257 ~ 41679356 (-)
ENSDARG00000002002	lmcd1	22: 39096911 ~ 39108026 (+)
ENSDARG00000061757	rabgap1l	22: 17312111 ~ 17454457 (+)
ENSDARG00000089207	ankrd27	25: 36405021 ~ 36437925 (+)
ENSDARG00000020128	NA	--
ENSDARG00000010297	NA	--
ENSDARG00000089700	NA	--
ENSDARG00000004312	NA	--
ENSDARG00000005879	NA	--
ENSDARG00000089695	NA	--
ENSDARG00000090224	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000020128

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.