Fish Spatial Expression Database

GENE ID: ENSDARG00000007889

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000007889 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000034700	vegfab	4: 5568688 ~ 5597802 (-)
ENSDARG00000045856	fgf6b	4: 5180650 ~ 5183337 (+)
ENSDARG00000000767	spi1b	7: 32644673 ~ 32659353 (-)
ENSDARG00000038139	pdgfbb	3: 24275597 ~ 24297419 (+)
ENSDARG00000003732	mitfa	6: 43390387 ~ 43433277 (+)
ENSDARG00000090783	mfap4	1: 59090583 ~ 59092056 (+)
ENSDARG00000069640	vegfc	1: 38850830 ~ 38908197 (-)
ENSDARG00000016939	itgb2	9: 44961138 ~ 44983666 (-)
ENSDARG00000094894	tyrobp	16: 25196572 ~ 25200757 (+)
ENSDARG00000045959	csf3r	16: 3103182 ~ 3127749 (-)
ENSDARG00000055290	mpeg1.1	8: 29710110 ~ 29713621 (-)
ENSDARG00000068263	csf1b	8: 37168570 ~ 37202417 (+)
ENSDARG00000076767	pgfb	17: 44697604 ~ 44752439 (+)
ENSDARG00000037677	fgf24	14: 5506983 ~ 5546497 (-)
ENSDARG00000014946	angpt2a	13: 6295173 ~ 6306886 (+)
ENSDARG00000056407	irf8	18: 30567945 ~ 30573849 (+)
ENSDARG00000091003	il34	18: 18527170 ~ 18543358 (-)
ENSDARG00000096587	itgam	12: 4147714 ~ 4167750 (+)
ENSDARG00000053906	angpt2b	19: 35799384 ~ 35852390 (+)
ENSDARG00000077677	pdgfd	15: 44929497 ~ 44995151 (+)
ENSDARG00000053624	csf1rb	21: 43854594 ~ 43877428 (+)
ENSDARG00000042811	fgf1b	21: 44112914 ~ 44116241 (+)
ENSDARG00000056624	vegfd	11: 29889828 ~ 29916607 (-)
ENSDARG00000075343	csf1a	11: 23265157 ~ 23297192 (+)
ENSDARG00000019521	mpx	10: 7778870 ~ 7785945 (-)
ENSDARG00000043962	fgf18b	10: 21471316 ~ 21484065 (-)
ENSDARG00000071437	ptprc	22: 22977268 ~ 23067859 (-)
ENSDARG00000086778	pdgfba	22: 29312228 ~ 29336309 (-)
ENSDARG00000070917	kitlga	25: 18118906 ~ 18140537 (-)
ENSDARG00000009351	fgf6a	25: 16945348 ~ 16951890 (+)
ENSDARG00000007889	NA	--
ENSDARG00000014709	NA	--
ENSDARG00000045971	NA	--
ENSDARG00000069128	NA	--
ENSDARG00000088098	NA	--
ENSDARG00000056074	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
	GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
	GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000007889

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.