Fish Spatial Expression Database

GENE ID: ENSDARG00000011184

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000011184 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000011545	arrb2b	7: 25920792 ~ 26005691 (+)
ENSDARG00000055229	ncs1a	5: 32402026 ~ 32445835 (-)
ENSDARG00000052223	rcvrna	3: 50441444 ~ 50443607 (-)
ENSDARG00000097008	opn1mw1	6: 41181869 ~ 41183823 (+)
ENSDARG00000044280	opn1mw2	6: 41186320 ~ 41189460 (+)
ENSDARG00000044279	opn1mw3	6: 41191482 ~ 41193419 (+)
ENSDARG00000000638	opn1mw4	6: 41200500 ~ 41202554 (+)
ENSDARG00000052088	cxcr1	9: 48085039 ~ 48091741 (+)
ENSDARG00000041959	cxcr4b	9: 10692905 ~ 10694930 (+)
ENSDARG00000076546	trhra	16: 38818864 ~ 38826777 (+)
ENSDARG00000079829	ccr2	16: 8668519 ~ 8670413 (+)
ENSDARG00000004358	gnb3a	16: 12022543 ~ 12049762 (+)
ENSDARG00000019902	rcvrn2	16: 13911692 ~ 13921589 (-)
ENSDARG00000090464	taar14h	20: 46250944 ~ 46252080 (+)
ENSDARG00000034229	kcnip3a	8: 42764234 ~ 42907824 (+)
ENSDARG00000054186	ncs1b	8: 32516160 ~ 32599858 (+)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000009637	rcvrn3	19: 10339538 ~ 10352579 (+)
ENSDARG00000036159	trhrb	19: 22727940 ~ 22731812 (+)
ENSDARG00000078068	abcg4b	15: 23487730 ~ 23508214 (-)
ENSDARG00000039489	git1	15: 28431621 ~ 28480576 (-)
ENSDARG00000030758	guca1c	15: 2884711 ~ 2903475 (-)
ENSDARG00000013393	guca1b	23: 19227296 ~ 19230627 (-)
ENSDARG00000044629	guca1d	21: 22906479 ~ 22910530 (-)
ENSDARG00000070666	rhol	11: 19095431 ~ 19097746 (-)
ENSDARG00000039215	arrb2a	10: 22890791 ~ 22907418 (+)
ENSDARG00000045737	guca1g	25: 14092871 ~ 14096311 (+)
ENSDARG00000059257	NA	--
ENSDARG00000011184	NA	--
ENSDARG00000078384	NA	--
ENSDARG00000062999	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000011184

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.