Fish Spatial Expression Database

GENE ID: ENSDARG00000029446

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000029446 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000017794	sdr16c5b	7: 58699718 ~ 58718472 (+)
ENSDARG00000076933	aldh1a3	7: 9721385 ~ 9803154 (-)
ENSDARG00000008491	si:ch211-107o10.3	7: 30178253 ~ 30191357 (+)
ENSDARG00000053493	aldh1a2	7: 30326184 ~ 30367650 (-)
ENSDARG00000021135	dhrs4	7: 24039464 ~ 24047316 (-)
ENSDARG00000093081	si:ch73-92i20.1	5: 21891305 ~ 21909082 (+)
ENSDARG00000076998	si:ch73-92i20.1	5: 21922534 ~ 21932191 (+)
ENSDARG00000028048	rdh8a	3: 53687645 ~ 53722182 (-)
ENSDARG00000016213	zmp:0000001048	3: 53511936 ~ 53522208 (+)
ENSDARG00000028862	rdh20	6: 46458416 ~ 46474483 (-)
ENSDARG00000068474	si:dkey-94e7.2	2: 30721070 ~ 30726420 (+)
ENSDARG00000012369	rdh10b	2: 30182431 ~ 30186307 (+)
ENSDARG00000016233	sdr16c5a	2: 11483072 ~ 11504778 (-)
ENSDARG00000019260	dhrs9	9: 48706038 ~ 48736388 (-)
ENSDARG00000034577	si:dkey-23o4.6	16: 38109941 ~ 38118003 (-)
ENSDARG00000041873	si:dkey-221h15.4	20: 38831588 ~ 38836161 (-)
ENSDARG00000018069	rdh12	13: 33055548 ~ 33065830 (+)
ENSDARG00000059163	rbp3	12: 2665081 ~ 2670156 (+)
ENSDARG00000054797	zgc:153441	19: 42418227 ~ 42424599 (-)
ENSDARG00000044982	dhrs3a	23: 21663631 ~ 21674679 (+)
ENSDARG00000044803	dhrs3b	11: 28590733 ~ 28614608 (-)
ENSDARG00000058966	zgc:112332	24: 18448108 ~ 18467064 (-)
ENSDARG00000089205	si:dkey-73n8.3	24: 18469766 ~ 18485491 (-)
ENSDARG00000058730	rdh10a	24: 13251480 ~ 13272843 (-)
ENSDARG00000045277	rdh12l	24: 32573480 ~ 32582880 (-)
ENSDARG00000020054	aox6	22: 14051245 ~ 14083583 (+)
ENSDARG00000013695	NA	--
ENSDARG00000029446	NA	--
ENSDARG00000034369	NA	--
ENSDARG00000077505	NA	--
ENSDARG00000052620	NA	--
ENSDARG00000088025	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000029446

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.