Fish Spatial Expression Database

GENE ID: ENSDARG00000058341

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000058341 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000036057	tradd	7: 29115890 ~ 29124578 (+)
ENSDARG00000060058	cylda	7: 37514780 ~ 37555208 (-)
ENSDARG00000090965	ripk3	7: 1330501 ~ 1348640 (-)
ENSDARG00000077768	malt1	5: 66310495 ~ 66340462 (+)
ENSDARG00000091926	casp22	5: 22585269 ~ 22590739 (-)
ENSDARG00000067672	card9	5: 51156808 ~ 51166025 (-)
ENSDARG00000025608	casp6b.1	3: 32953075 ~ 32958574 (-)
ENSDARG00000093405	casp6a	3: 32961488 ~ 32965848 (-)
ENSDARG00000090153	cyldl	6: 32834007 ~ 32844728 (+)
ENSDARG00000006677	ripk1l	2: 904362 ~ 920580 (+)
ENSDARG00000077130	bcl10	2: 1945211 ~ 1954204 (+)
ENSDARG00000017905	casp3a	1: 17527342 ~ 17536307 (+)
ENSDARG00000094433	caspbl	1: 58105762 ~ 58115298 (-)
ENSDARG00000076814	gzm3.4	9: 32670526 ~ 32672129 (-)
ENSDARG00000093990	gzm3.3	9: 32667169 ~ 32668928 (-)
ENSDARG00000055986	gzm3.2	9: 32657695 ~ 32663496 (-)
ENSDARG00000074802	cflarb	9: 701452 ~ 704667 (-)
ENSDARG00000018569	tnfrsf1a	16: 17060758 ~ 17072561 (-)
ENSDARG00000040076	pycard	16: 41984032 ~ 41990421 (-)
ENSDARG00000008165	caspa	16: 41993551 ~ 42004544 (-)
ENSDARG00000022418	faf1	8: 16274778 ~ 16406440 (-)
ENSDARG00000043586	fas	17: 23619924 ~ 23631411 (-)
ENSDARG00000055045	casp3b	14: 4125363 ~ 4145594 (-)
ENSDARG00000069290	bida	18: 20566817 ~ 20573129 (+)
ENSDARG00000004451	tnfrsfa	21: 16172931 ~ 16219400 (-)
ENSDARG00000055550	casp21	21: 8533533 ~ 8538300 (+)
ENSDARG00000055966	cflara	11: 30332959 ~ 30341431 (-)
ENSDARG00000057241	tnfsf10	24: 26932472 ~ 26937526 (+)
ENSDARG00000054515	NA	--
ENSDARG00000011520	NA	--
ENSDARG00000058341	NA	--
ENSDARG00000068099	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
	GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000058341

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.