Fish Spatial Expression Database

GENE ID: ENSDARG00000067989

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000067989 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000029170	si:ch211-200p22.4	7: 23748971 ~ 23848012 (-)
ENSDARG00000010042	dnm1a	5: 1278092 ~ 1421927 (+)
ENSDARG00000009281	dnm1b	5: 63668735 ~ 63737734 (+)
ENSDARG00000020009	bmp2k	5: 39099172 ~ 39152767 (+)
ENSDARG00000054320	ap2a1	3: 32365811 ~ 32401481 (+)
ENSDARG00000008377	epn2	3: 39656188 ~ 39690218 (+)
ENSDARG00000020960	hgs	3: 50076793 ~ 50118140 (-)
ENSDARG00000078953	epn3a	3: 50155245 ~ 50269145 (+)
ENSDARG00000069937	dnm2a	3: 47130912 ~ 47213115 (+)
ENSDARG00000058820	bin1b	6: 6999487 ~ 7052603 (-)
ENSDARG00000010255	bin2b	6: 38879961 ~ 38894366 (+)
ENSDARG00000002790	ap2m1a	2: 9789811 ~ 9818711 (-)
ENSDARG00000054337	ap1g2	2: 38287358 ~ 38312757 (-)
ENSDARG00000004633	epn3b	1: 57331813 ~ 57340192 (+)
ENSDARG00000042114	bin1a	9: 7410798 ~ 7444753 (-)
ENSDARG00000010411	epn1	16: 12730311 ~ 12756528 (+)
ENSDARG00000032238	dnm3a	20: 14817630 ~ 14925281 (-)
ENSDARG00000000161	itsn2a	20: 25359064 ~ 25436389 (-)
ENSDARG00000078652	zfyve1	20: 28407720 ~ 28418719 (+)
ENSDARG00000054973	itsn2b	17: 30473507 ~ 30521043 (-)
ENSDARG00000003642	zfyve19	17: 2108984 ~ 2126517 (-)
ENSDARG00000033899	ap2m1b	18: 45955042 ~ 45983382 (+)
ENSDARG00000079847	zgc:194578	19: 10375782 ~ 10395683 (-)
ENSDARG00000088885	si:ch1073-340i21.3	15: 46329149 ~ 46336399 (+)
ENSDARG00000014137	picalmb	15: 19726229 ~ 19772372 (-)
ENSDARG00000003219	bin2a	23: 33739215 ~ 33753361 (-)
ENSDARG00000077686	aak1b	10: 41060739 ~ 41157135 (-)
ENSDARG00000012866	picalma	10: 29137482 ~ 29225165 (+)
ENSDARG00000088388	NA	--
ENSDARG00000039384	NA	--
ENSDARG00000044591	NA	--
ENSDARG00000067989	NA	--
ENSDARG00000076210	NA	--
ENSDARG00000076591	NA	--
ENSDARG00000077521	NA	--
ENSDARG00000020270	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000067989

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.