Fish Spatial Expression Database

GENE ID: ENSDARG00000035606

Symbol	Location	Gene type	Genome version	Species
aldh3b2	5: 19477555 ~ 19488134 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000035606 (aldh3b2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000035606	aldh3b2	5: 19477555 ~ 19488134 (+)
ENSDARG00000035257	akr1a1a	5: 41521043 ~ 41531629 (-)
ENSDARG00000037935	aldh16a1	3: 32080403 ~ 32098515 (+)
ENSDARG00000006031	abat	3: 27832500 ~ 27880229 (-)
ENSDARG00000014646	aoc2	3: 32924185 ~ 32934359 (-)
ENSDARG00000027419	gad1b	6: 3827751 ~ 3863452 (+)
ENSDARG00000052030	akr1a1b	6: 33918813 ~ 33925432 (-)
ENSDARG00000022213	uck2b	2: 6051916 ~ 6065416 (-)
ENSDARG00000055370	zgc:163121	2: 27877908 ~ 27900535 (-)
ENSDARG00000005525	acy3.2	1: 52489962 ~ 52498146 (-)
ENSDARG00000093003	acy3.1	1: 52499412 ~ 52505279 (-)
ENSDARG00000036967	smox	1: 41849152 ~ 41865986 (+)
ENSDARG00000023712	mao	9: 33660964 ~ 33725972 (-)
ENSDARG00000093411	gad1a	9: 3621968 ~ 3653271 (-)
ENSDARG00000022730	aasdh	20: 25645459 ~ 25659372 (+)
ENSDARG00000015337	comta	8: 8459192 ~ 8480579 (+)
ENSDARG00000043403	paox1	8: 15239549 ~ 15250265 (+)
ENSDARG00000006074	uck2a	8: 21114338 ~ 21133119 (+)
ENSDARG00000011521	upb1	8: 30699429 ~ 30730675 (+)
ENSDARG00000044142	acss1	17: 25833947 ~ 25853922 (+)
ENSDARG00000087262	zgc:63568	14: 35892802 ~ 35900420 (+)
ENSDARG00000088366	zgc:77938	14: 35901249 ~ 35911982 (+)
ENSDARG00000091211	adh8a	13: 12653975 ~ 12660318 (-)
ENSDARG00000042620	gstr	19: 770300 ~ 776076 (+)
ENSDARG00000003931	cndp2	19: 20801060 ~ 20823099 (+)
ENSDARG00000037781	acss2	23: 9230431 ~ 9291892 (+)
ENSDARG00000025679	comtb	11: 25619892 ~ 25631442 (+)
ENSDARG00000092976	si:ch211-127i16.2	10: 19427474 ~ 19523752 (-)
ENSDARG00000015537	gad2	24: 6133147 ~ 6158933 (-)
ENSDARG00000061123	NA	--
ENSDARG00000091639	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
	GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000035606

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.