Fish Spatial Expression Database

GENE ID: ENSDARG00000007177

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000007177 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000053468	adam10a	7: 30406150 ~ 30492261 (-)
ENSDARG00000092003	ccs	7: 6990510 ~ 7011961 (+)
ENSDARG00000091348	rtn3	7: 17716601 ~ 17757529 (+)
ENSDARG00000005612	aph1b	7: 29176924 ~ 29186939 (+)
ENSDARG00000067566	sftpbb	5: 68845048 ~ 68876211 (-)
ENSDARG00000018032	scn8ab	6: 39392442 ~ 39489190 (-)
ENSDARG00000044601	rtn4a	6: 6231012 ~ 6258451 (-)
ENSDARG00000038593	rspo4	6: 51824596 ~ 51843277 (+)
ENSDARG00000038537	gga1	6: 22119189 ~ 22146258 (-)
ENSDARG00000090724	scn12aa	2: 51888033 ~ 52020049 (-)
ENSDARG00000015540	psen2	1: 51048975 ~ 51062405 (-)
ENSDARG00000055543	appb	9: 35026415 ~ 35155089 (-)
ENSDARG00000093093	adam17b	20: 29586529 ~ 29613629 (+)
ENSDARG00000004870	psen1	17: 51206225 ~ 51224800 (-)
ENSDARG00000016412	agt	13: 23988442 ~ 23995876 (+)
ENSDARG00000075570	ide	13: 42309688 ~ 42350160 (+)
ENSDARG00000054864	aplp2	18: 44364530 ~ 44527124 (-)
ENSDARG00000095072	ctslb	12: 16895644 ~ 16898140 (-)
ENSDARG00000095698	si:dkey-228a15.1	19: 42559143 ~ 42566559 (-)
ENSDARG00000035663	zgc:103438	19: 42567539 ~ 42573297 (-)
ENSDARG00000028012	tpmt.2	19: 47299166 ~ 47309383 (+)
ENSDARG00000013892	sorl1	15: 21541010 ~ 21669618 (-)
ENSDARG00000068698	psenen	15: 37545855 ~ 37550338 (+)
ENSDARG00000062129	mxra8b	23: 29889089 ~ 29906163 (+)
ENSDARG00000019060	snx12	21: 30470809 ~ 30488267 (+)
ENSDARG00000062222	mxra8a	11: 24429923 ~ 24458786 (-)
ENSDARG00000094708	sftpba	10: 7798087 ~ 7805010 (+)
ENSDARG00000003705	prnprs3	25: 3677650 ~ 3685280 (+)
ENSDARG00000004148	NA	--
ENSDARG00000026398	NA	--
ENSDARG00000058028	NA	--
ENSDARG00000068458	NA	--
ENSDARG00000086067	NA	--
ENSDARG00000090918	NA	--
ENSDARG00000007177	NA	--
ENSDARG00000026738	NA	--
ENSDARG00000059036	NA	--
ENSDARG00000059238	NA	--
ENSDARG00000073668	NA	--
ENSDARG00000087000	NA	--
ENSDARG00000090364	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000007177

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.