Fish Spatial Expression Database

GENE ID: ENSDARG00000016868

Symbol	Location	Gene type	Genome version	Species
rhobtb4	5: 43427841 ~ 43502675 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000016868 (rhobtb4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000076729	myo9aa	7: 56889879 ~ 57086457 (+)
ENSDARG00000086463	klhl13	5: 37343643 ~ 37440449 (+)
ENSDARG00000016868	rhobtb4	5: 43427841 ~ 43502675 (+)
ENSDARG00000004034	arhgdig	3: 27713610 ~ 27769232 (+)
ENSDARG00000073684	quo	6: 2030703 ~ 2092659 (+)
ENSDARG00000074634	keap1b	6: 131998 ~ 138603 (-)
ENSDARG00000016132	keap1a	2: 41835025 ~ 41861040 (-)
ENSDARG00000052496	arhgap45a	2: 56679214 ~ 56757069 (-)
ENSDARG00000067751	si:rp71-68n21.9	9: 21165017 ~ 21176861 (+)
ENSDARG00000095675	ccdc141	9: 43074531 ~ 43142677 (-)
ENSDARG00000000370	triob	16: 8751815 ~ 8927425 (-)
ENSDARG00000094224	si:dkey-219e20.2	20: 21022641 ~ 21024865 (+)
ENSDARG00000000161	itsn2a	20: 25359064 ~ 25436389 (-)
ENSDARG00000074828	rhobtb2a	8: 50493095 ~ 50502243 (+)
ENSDARG00000092360	si:ch211-51h9.6	8: 2536280 ~ 2543327 (-)
ENSDARG00000054973	itsn2b	17: 30473507 ~ 30521043 (-)
ENSDARG00000056080	si:dkey-191g9.5	13: 21712284 ~ 21739142 (-)
ENSDARG00000096701	si:dkey-21e13.3	12: 35084809 ~ 35095414 (-)
ENSDARG00000079468	rhobtb1	12: 8003872 ~ 8039095 (+)
ENSDARG00000019426	trioa	19: 41841147 ~ 42045372 (-)
ENSDARG00000094644	si:dkey-68l7.2	23: 21955056 ~ 21957383 (-)
ENSDARG00000093367	si:ch1073-272j17.3	23: 1058116 ~ 1065435 (-)
ENSDARG00000079283	si:ch211-247j9.1	21: 32332616 ~ 32349711 (+)
ENSDARG00000074184	arhgap32b	21: 24539896 ~ 24632778 (-)
ENSDARG00000086169	rskrb	21: 39645762 ~ 39670375 (-)
ENSDARG00000089340	rhobtb2b	10: 42678520 ~ 42716739 (+)
ENSDARG00000026329	arhgap29a	24: 28448387 ~ 28557301 (+)
ENSDARG00000095174	arhgap45b	22: 17632821 ~ 17652914 (-)
ENSDARG00000044524	def6b	22: 978867 ~ 996521 (+)
ENSDARG00000038119	NA	--
ENSDARG00000078231	NA	--
ENSDARG00000096230	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE104057 (heart replicate3)	heart	baseline	late embryo, 2dpf, isolated embryonic heart	GSM2788520	GSE104057

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000016868

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.