Fish Spatial Expression Database

GENE ID: ENSDARG00000024928

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000024928 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045516	itih2	4: 25187912 ~ 25215968 (-)
ENSDARG00000032919	chchd3a	4: 15490215 ~ 15603588 (-)
ENSDARG00000077960	si:ch211-186e20.7	5: 28797771 ~ 28802250 (+)
ENSDARG00000087143	serpina7	5: 28830388 ~ 28832950 (+)
ENSDARG00000074712	si:ch211-186e20.2	5: 28857969 ~ 28859840 (+)
ENSDARG00000016319	c9	5: 32345187 ~ 32355289 (+)
ENSDARG00000040528	lgals3bpb	3: 57741933 ~ 57744323 (-)
ENSDARG00000079727	selenop2	2: 27394798 ~ 27401105 (+)
ENSDARG00000076838	apom	2: 42228741 ~ 42234561 (-)
ENSDARG00000020866	apoa4b.2	16: 23947196 ~ 23948538 (+)
ENSDARG00000023111	plg	20: 42688488 ~ 42702884 (-)
ENSDARG00000090850	serpina1l	20: 10538025 ~ 10541197 (+)
ENSDARG00000060124	timm17b	8: 44921123 ~ 44926077 (-)
ENSDARG00000043648	pnck	8: 9149436 ~ 9167115 (+)
ENSDARG00000041569	ces2a	18: 17408470 ~ 17415609 (-)
ENSDARG00000041595	ces3	18: 17418254 ~ 17426306 (+)
ENSDARG00000019492	shbg	12: 22511015 ~ 22524388 (-)
ENSDARG00000056314	a2ml	15: 21113965 ~ 21132480 (-)
ENSDARG00000041685	si:dkey-105h12.2	15: 21220744 ~ 21239416 (-)
ENSDARG00000003206	chchd6a	23: 34047413 ~ 34185019 (+)
ENSDARG00000037140	pfkfb1	23: 26017227 ~ 26037969 (+)
ENSDARG00000023840	pfkfb2a	23: 42765700 ~ 42810664 (-)
ENSDARG00000076448	serpinf2a	21: 40092301 ~ 40104916 (+)
ENSDARG00000007040	tmigd1	21: 39925379 ~ 39931400 (-)
ENSDARG00000007024	uox	11: 8160894 ~ 8168011 (-)
ENSDARG00000055036	itih3a	11: 3614326 ~ 3629216 (-)
ENSDARG00000029510	timm17a	11: 24900123 ~ 24906264 (+)
ENSDARG00000004296	ambp	10: 10801564 ~ 10824286 (+)
ENSDARG00000089645	si:ch1073-406l10.2	24: 33288455 ~ 33291784 (-)
ENSDARG00000042613	crp3	24: 38092608 ~ 38097305 (-)
ENSDARG00000060933	baiap2l2b	22: 29135846 ~ 29166693 (+)
ENSDARG00000044526	camk1ga	22: 1049367 ~ 1069407 (+)
ENSDARG00000042684	serpinc1	22: 16022211 ~ 16028191 (+)
ENSDARG00000053973	fetub	22: 37888249 ~ 37900135 (+)
ENSDARG00000044915	NA	--
ENSDARG00000074394	NA	--
ENSDARG00000091469	NA	--
ENSDARG00000024928	NA	--
ENSDARG00000094496	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000024928

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.