Fish Spatial Expression Database

GENE ID: ENSDARG00000032984

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000032984 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000056145	si:dkey-159a18.1	4: 20110921 ~ 20118468 (-)
ENSDARG00000059043	ntf3	4: 4397503 ~ 4431975 (-)
ENSDARG00000018817	bdnf	7: 31924983 ~ 31941670 (-)
ENSDARG00000077465	sorcs2	7: 39757608 ~ 40057772 (+)
ENSDARG00000091348	rtn3	7: 17716601 ~ 17757529 (+)
ENSDARG00000090035	rtn4r	5: 10765611 ~ 10946379 (-)
ENSDARG00000043795	arhgdia	3: 59899452 ~ 59947208 (+)
ENSDARG00000014050	ngfb	6: 49169420 ~ 49215827 (-)
ENSDARG00000044601	rtn4a	6: 6231012 ~ 6258451 (-)
ENSDARG00000096191	si:ch211-112b1.2	1: 48921944 ~ 48922273 (-)
ENSDARG00000055543	appb	9: 35026415 ~ 35155089 (-)
ENSDARG00000004586	ntrk1	16: 45796602 ~ 45854882 (-)
ENSDARG00000021143	rtn1b	20: 20637866 ~ 20696957 (+)
ENSDARG00000079396	lrfn5b	20: 54383838 ~ 54407669 (+)
ENSDARG00000056252	sort1b	8: 25041713 ~ 25074319 (-)
ENSDARG00000059897	ntrk2a	8: 49778486 ~ 49865375 (+)
ENSDARG00000006497	rtn1a	13: 31424586 ~ 31470439 (-)
ENSDARG00000054864	aplp2	18: 44364530 ~ 44527124 (-)
ENSDARG00000016088	rtn2a	15: 9010891 ~ 9031996 (-)
ENSDARG00000089444	omgb	15: 30917282 ~ 30921559 (+)
ENSDARG00000058961	ngfa	23: 4929442 ~ 4975517 (-)
ENSDARG00000058212	ndnl2	23: 12897878 ~ 12913131 (-)
ENSDARG00000057027	rtn2b	21: 21374277 ~ 21386120 (+)
ENSDARG00000029402	sort1a	11: 36280523 ~ 36341189 (-)
ENSDARG00000086573	omga	10: 37334270 ~ 37337579 (-)
ENSDARG00000011863	ptk7a	22: 38394502 ~ 38459454 (-)
ENSDARG00000034165	lingo1a	25: 7229046 ~ 7230905 (+)
ENSDARG00000077228	ntrk3a	25: 11795683 ~ 12203961 (-)
ENSDARG00000076333	NA	--
ENSDARG00000033713	NA	--
ENSDARG00000058028	NA	--
ENSDARG00000063035	NA	--
ENSDARG00000078049	NA	--
ENSDARG00000089918	NA	--
ENSDARG00000026738	NA	--
ENSDARG00000032984	NA	--
ENSDARG00000059036	NA	--
ENSDARG00000059238	NA	--
ENSDARG00000091193	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000032984

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.