Fish Spatial Expression Database

GENE ID: ENSDARG00000042913

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042913 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000070546	msgn1	4: 306036 ~ 308006 (+)
ENSDARG00000073965	si:dkey-202b22.5	4: 18489207 ~ 18491333 (+)
ENSDARG00000017355	rsph9	4: 5645251 ~ 5652030 (-)
ENSDARG00000011582	sox5	4: 16982249 ~ 17055950 (-)
ENSDARG00000067606	rsph4a	5: 61919217 ~ 61930860 (+)
ENSDARG00000034427	jpt2	3: 15893039 ~ 15902229 (+)
ENSDARG00000075296	fam83c	6: 52468139 ~ 52484566 (-)
ENSDARG00000017708	lrrc40	6: 30113750 ~ 30122554 (+)
ENSDARG00000058218	fam151a	2: 11069055 ~ 11082914 (-)
ENSDARG00000087107	si:ch73-222h13.1	1: 10783670 ~ 10806625 (-)
ENSDARG00000089742	fam161a	1: 53686995 ~ 53700392 (-)
ENSDARG00000006292	maats1	9: 9441453 ~ 9501931 (+)
ENSDARG00000022660	armc2	20: 32228210 ~ 32270866 (-)
ENSDARG00000017055	zmynd12	8: 26902358 ~ 26918516 (-)
ENSDARG00000058280	si:dkey-208b23.5	8: 13036221 ~ 13064330 (-)
ENSDARG00000054414	spata17	17: 30205258 ~ 30274315 (+)
ENSDARG00000090319	rnf212	14: 17397534 ~ 17416730 (+)
ENSDARG00000077823	hmgxb3	14: 3071110 ~ 3104879 (+)
ENSDARG00000078995	tex11	14: 33049579 ~ 33068736 (+)
ENSDARG00000001825	cfap43	13: 24717880 ~ 24743151 (+)
ENSDARG00000019487	tmx1	13: 36923052 ~ 36934915 (+)
ENSDARG00000056764	hydin	18: 21273749 ~ 21401401 (+)
ENSDARG00000096777	si:ch73-81k8.2	12: 28899760 ~ 28910434 (-)
ENSDARG00000075526	pwwp2a	21: 30017357 ~ 30032706 (-)
ENSDARG00000020158	spag6	24: 17269849 ~ 17279904 (+)
ENSDARG00000090230	tmem108	24: 9744012 ~ 9873206 (+)
ENSDARG00000043126	blf	22: 9917007 ~ 9923692 (+)
ENSDARG00000004736	NA	--
ENSDARG00000016485	NA	--
ENSDARG00000027714	NA	--
ENSDARG00000042913	NA	--
ENSDARG00000078192	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000042913

Function

There is no KEGG result!

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

GENE ID: ENSDARG00000042913

Function

There is no KEGG result!

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.