Fish Spatial Expression Database

GENE ID: ENSDARG00000055728

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000055728 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000093658	tm7sf3	4: 1732825 ~ 1757460 (-)
ENSDARG00000057334	cmasa	4: 14727018 ~ 14737102 (+)
ENSDARG00000034368	hexb	5: 34600714 ~ 34616599 (-)
ENSDARG00000063021	rpain	5: 3891485 ~ 3908849 (+)
ENSDARG00000052154	lix1	5: 64814482 ~ 64831207 (-)
ENSDARG00000070605	b4galnt2.2	3: 23045214 ~ 23060121 (+)
ENSDARG00000094579	b4galnt2.1	3: 23063718 ~ 23085279 (+)
ENSDARG00000015374	st3gal3a	6: 3334392 ~ 3405495 (+)
ENSDARG00000077352	b4galnt1b	6: 39222598 ~ 39252851 (+)
ENSDARG00000015252	st3gal3b	2: 17266759 ~ 17393971 (-)
ENSDARG00000090013	ccdc9b	17: 2479303 ~ 2535682 (-)
ENSDARG00000037556	st3gal5	14: 9481443 ~ 9499474 (+)
ENSDARG00000039064	st3gal7	13: 40716319 ~ 40726865 (-)
ENSDARG00000040527	siae	18: 36582815 ~ 36598693 (+)
ENSDARG00000020085	slc33a1	18: 34158178 ~ 34171280 (-)
ENSDARG00000023900	casd1	19: 41006975 ~ 41034224 (+)
ENSDARG00000079654	st3gal1	19: 4773710 ~ 4793333 (-)
ENSDARG00000057677	neu4	15: 2490204 ~ 2497568 (-)
ENSDARG00000004636	ccdc9	15: 26903267 ~ 26931541 (-)
ENSDARG00000070868	cfap126	23: 19977120 ~ 19981813 (+)
ENSDARG00000054211	st8sia7.1	23: 44797665 ~ 44819100 (-)
ENSDARG00000061520	b4galnt1a	23: 28097282 ~ 28123767 (-)
ENSDARG00000044514	st6gal1	21: 31150438 ~ 31184035 (+)
ENSDARG00000096382	neu3.1	21: 21791343 ~ 21794771 (+)
ENSDARG00000096368	neu3.5	21: 21817975 ~ 21819321 (+)
ENSDARG00000044775	fut7	21: 13676890 ~ 13681447 (+)
ENSDARG00000007494	st3gal8	11: 26568492 ~ 26590429 (-)
ENSDARG00000052113	hexa	25: 22216723 ~ 22241312 (+)
ENSDARG00000089903	CABZ01039863.1	25: 5249513 ~ 5261325 (+)
ENSDARG00000076361	CABZ01039859.1	25: 5304652 ~ 5327417 (+)
ENSDARG00000036009	NA	--
ENSDARG00000041260	NA	--
ENSDARG00000069408	NA	--
ENSDARG00000040037	NA	--
ENSDARG00000055728	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000055728

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.