Fish Spatial Expression Database

GENE ID: ENSDARG00000057345

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000057345 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000034700	vegfab	4: 5568688 ~ 5597802 (-)
ENSDARG00000035535	rasa1a	5: 47862636 ~ 47967526 (+)
ENSDARG00000038524	pik3r1	5: 54765702 ~ 54792239 (-)
ENSDARG00000038059	grb2b	3: 25432419 ~ 25492495 (-)
ENSDARG00000038139	pdgfbb	3: 24275597 ~ 24297419 (+)
ENSDARG00000074262	nck1a	2: 24963861 ~ 24981356 (-)
ENSDARG00000069640	vegfc	1: 38850830 ~ 38908197 (-)
ENSDARG00000070494	pdgfra	20: 22435180 ~ 22476255 (-)
ENSDARG00000076767	pgfb	17: 44697604 ~ 44752439 (+)
ENSDARG00000077588	pdgfc	14: 35567321 ~ 35853647 (-)
ENSDARG00000068763	plcg2	18: 13235714 ~ 13293642 (+)
ENSDARG00000092862	si:ch211-260p9.3	18: 13300768 ~ 13321062 (+)
ENSDARG00000056623	ptenb	12: 17399852 ~ 17424174 (-)
ENSDARG00000000068	slc9a3r1a	12: 33484458 ~ 33537126 (+)
ENSDARG00000030364	angpt1	19: 46812272 ~ 46957968 (-)
ENSDARG00000077677	pdgfd	15: 44929497 ~ 44995151 (+)
ENSDARG00000038442	plcg1	23: 2789422 ~ 2872819 (+)
ENSDARG00000012340	ptpn11b	23: 23918421 ~ 23995856 (+)
ENSDARG00000008107	src	23: 39346774 ~ 39450700 (+)
ENSDARG00000056624	vegfd	11: 29889828 ~ 29916607 (-)
ENSDARG00000075343	csf1a	11: 23265157 ~ 23297192 (+)
ENSDARG00000073665	rasa1b	10: 43406796 ~ 43450588 (+)
ENSDARG00000020334	ptpn11a	10: 3428194 ~ 3455639 (+)
ENSDARG00000075027	fgfr1bl	22: 6962924 ~ 6968756 (-)
ENSDARG00000086778	pdgfba	22: 29312228 ~ 29336309 (-)
ENSDARG00000042690	s1pr1	22: 16038495 ~ 16042243 (-)
ENSDARG00000070917	kitlga	25: 18118906 ~ 18140537 (-)
ENSDARG00000055505	NA	--
ENSDARG00000014709	NA	--
ENSDARG00000040839	NA	--
ENSDARG00000045971	NA	--
ENSDARG00000058424	NA	--
ENSDARG00000090703	NA	--
ENSDARG00000057345	NA	--
ENSDARG00000068095	NA	--
ENSDARG00000074042	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
	GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000057345

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.