Fish Spatial Expression Database

GENE ID: ENSDARG00000077800

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000077800 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000069326	mus81	7: 19850889 ~ 19883099 (+)
ENSDARG00000027586	top3b	5: 13211452 ~ 13251907 (-)
ENSDARG00000024967	fancg	5: 41496490 ~ 41509339 (+)
ENSDARG00000052827	top3a	3: 40235288 ~ 40254634 (-)
ENSDARG00000089291	cenpx	3: 57825938 ~ 57830023 (+)
ENSDARG00000053574	fancd2	6: 42291308 ~ 42336995 (-)
ENSDARG00000070485	cenps	6: 45934682 ~ 45937000 (+)
ENSDARG00000056414	usp1	6: 32394502 ~ 32411727 (-)
ENSDARG00000038543	wdr48b	2: 49805892 ~ 49834052 (+)
ENSDARG00000012325	zgc:110269	2: 16449627 ~ 16458472 (+)
ENSDARG00000044923	ube2w	2: 30193747 ~ 30200206 (-)
ENSDARG00000031680	ercc1	9: 32674676 ~ 32684008 (-)
ENSDARG00000067596	fancb	9: 54946499 ~ 54981471 (-)
ENSDARG00000075915	si:ch73-70k4.1	8: 17529151 ~ 17535031 (+)
ENSDARG00000008472	apex2	8: 22509508 ~ 22515042 (-)
ENSDARG00000068870	fance	8: 23731483 ~ 23737370 (+)
ENSDARG00000055232	fancc	8: 30112624 ~ 30156117 (+)
ENSDARG00000041376	rmi1	8: 49766338 ~ 49769987 (+)
ENSDARG00000068833	dclre1b	8: 24107030 ~ 24113604 (-)
ENSDARG00000007885	fancl	13: 26703897 ~ 26780797 (+)
ENSDARG00000062269	fan1	18: 21686115 ~ 21725805 (-)
ENSDARG00000079457	faap100	12: 26538861 ~ 26547248 (+)
ENSDARG00000076913	eme1	12: 21669385 ~ 21684255 (-)
ENSDARG00000077900	si:ch211-141o9.10	12: 19272963 ~ 19282187 (-)
ENSDARG00000077516	recql4	19: 2752933 ~ 2822372 (-)
ENSDARG00000063285	ube2t	23: 5104743 ~ 5108055 (+)
ENSDARG00000025421	tdrd3	11: 42726712 ~ 42819730 (+)
ENSDARG00000051731	faap24	25: 36287745 ~ 36292346 (-)
ENSDARG00000019250	fancf	25: 35294670 ~ 35296165 (-)
ENSDARG00000026224	fanci	25: 8447565 ~ 8479171 (+)
ENSDARG00000087471	NA	--
ENSDARG00000068961	NA	--
ENSDARG00000070216	NA	--
ENSDARG00000077800	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
	GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000077800

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.