Fish Spatial Expression Database

GENE ID: ENSDARG00000078378

Symbol	Location	Gene type	Genome version	Species
unm_sa808	5: 5689476 ~ 5696173 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000078378 (unm_sa808), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000036057	tradd	7: 29115890 ~ 29124578 (+)
ENSDARG00000075110	dab2ipb	5: 33679559 ~ 33886495 (-)
ENSDARG00000035360	mink1	5: 38301906 ~ 38384755 (-)
ENSDARG00000078378	unm_sa808	5: 5689476 ~ 5696173 (+)
ENSDARG00000013997	ern1	3: 55420176 ~ 55481157 (-)
ENSDARG00000036257	rasal2	2: 35732652 ~ 35851661 (+)
ENSDARG00000006677	ripk1l	2: 904362 ~ 920580 (+)
ENSDARG00000056218	tnika	2: 25657958 ~ 25817227 (+)
ENSDARG00000058475	ern2	1: 9169807 ~ 9195760 (-)
ENSDARG00000070272	casp10	9: 1313418 ~ 1357809 (+)
ENSDARG00000067723	tank	9: 51521248 ~ 51563575 (-)
ENSDARG00000018569	tnfrsf1a	16: 17060758 ~ 17072561 (-)
ENSDARG00000020469	map3k7	20: 24149794 ~ 24183382 (-)
ENSDARG00000005416	map3k5	20: 3005472 ~ 3087162 (-)
ENSDARG00000021509	tab2	20: 1329509 ~ 1350296 (+)
ENSDARG00000069484	dab2ipa	8: 12134127 ~ 12264521 (-)
ENSDARG00000069482	traf1	8: 12408840 ~ 12432685 (-)
ENSDARG00000011662	chuk	13: 25286538 ~ 25379820 (+)
ENSDARG00000027777	tnfaip3	13: 1182257 ~ 1208930 (+)
ENSDARG00000069733	mavs	13: 15182149 ~ 15213869 (+)
ENSDARG00000039125	map4k5	13: 36705595 ~ 36761454 (-)
ENSDARG00000009511	tnfa	19: 27019432 ~ 27024019 (+)
ENSDARG00000054968	cd40	23: 37823560 ~ 37835794 (-)
ENSDARG00000089868	si:ch211-112c15.8	23: 20771899 ~ 20780671 (+)
ENSDARG00000060498	tnfrsf9a	23: 30006206 ~ 30010042 (+)
ENSDARG00000044619	birc2	21: 22833905 ~ 22851230 (+)
ENSDARG00000011262	traip	11: 35162684 ~ 35171768 (-)
ENSDARG00000090728	tnfrsf9b	11: 40088141 ~ 40101246 (-)
ENSDARG00000070165	tnfrsf1b	11: 40431629 ~ 40457325 (-)
ENSDARG00000089724	cyldb	11: 25276748 ~ 25291709 (+)
ENSDARG00000056582	arf2b	24: 36373588 ~ 36400458 (+)
ENSDARG00000013310	map3k15	24: 25913162 ~ 25989500 (+)
ENSDARG00000017240	traf5	22: 38301365 ~ 38322451 (+)
ENSDARG00000033811	NA	--
ENSDARG00000059115	NA	--
ENSDARG00000068099	NA	--
ENSDARG00000079139	NA	--
ENSDARG00000088314	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000078378

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.