Fish Spatial Expression Database

GENE ID: ENSDARG00000056791

Symbol	Location	Gene type	Genome version	Species
pde6ga	3: 19460991 ~ 19466015 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000056791 (pde6ga), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000026820	gucy2d	5: 38123633 ~ 38161033 (-)
ENSDARG00000073998	si:ch211-23l10.3	3: 16473006 ~ 16493528 (-)
ENSDARG00000069806	sstr2b	3: 62416556 ~ 62417677 (-)
ENSDARG00000056791	pde6ga	3: 19460991 ~ 19466015 (+)
ENSDARG00000002508	ankrd33ab	6: 39279104 ~ 39286029 (+)
ENSDARG00000070726	cnga3a	6: 38791900 ~ 38818582 (-)
ENSDARG00000013221	pde4ca	2: 24781026 ~ 24866649 (+)
ENSDARG00000075098	wdr17	1: 38758261 ~ 38803495 (+)
ENSDARG00000012297	cnga3b	1: 10771457 ~ 10776547 (+)
ENSDARG00000057536	crygm2a	9: 22075528 ~ 22076368 (-)
ENSDARG00000044875	crygm2e	9: 22080122 ~ 22080989 (+)
ENSDARG00000076790	crygm2d16	9: 22157282 ~ 22158325 (-)
ENSDARG00000078189	crygm3	9: 22354281 ~ 22361681 (-)
ENSDARG00000025943	crygs3	9: 22351443 ~ 22366295 (+)
ENSDARG00000007682	ppdpfa	8: 23213320 ~ 23216035 (+)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000059090	sstr2a	12: 1556147 ~ 1557286 (-)
ENSDARG00000035798	gngt1	19: 40856534 ~ 40859468 (+)
ENSDARG00000035883	nt5c1aa	19: 32766423 ~ 32804535 (-)
ENSDARG00000025504	gucy2f	15: 29362714 ~ 29381134 (+)
ENSDARG00000055638	ankrd33aa	23: 27862807 ~ 27875140 (-)
ENSDARG00000011671	pde6b	21: 20356458 ~ 20376607 (+)
ENSDARG00000056511	arr3a	10: 26800213 ~ 26811397 (+)
ENSDARG00000074425	si:busm1-57f23.1	10: 13236100 ~ 13239367 (-)
ENSDARG00000078461	NA	--
ENSDARG00000087449	NA	--
ENSDARG00000022820	NA	--
ENSDARG00000061945	NA	--
ENSDARG00000074439	NA	--
ENSDARG00000087082	NA	--
ENSDARG00000088299	NA	--
ENSDARG00000096048	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
	GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
	GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000056791

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.