Fish Spatial Expression Database

GENE ID: ENSDARG00000026084

Symbol	Location	Gene type	Genome version	Species
si:dkey-43k4.5	6: 21633286 ~ 21678263 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000026084 (si:dkey-43k4.5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000057468	kcnc2	4: 2060524 ~ 2196928 (-)
ENSDARG00000036135	bbox1	7: 34296789 ~ 34315291 (+)
ENSDARG00000078650	kcna4	7: 32595981 ~ 32599669 (-)
ENSDARG00000091130	kcnq2b	6: 58406014 ~ 58499844 (+)
ENSDARG00000026084	si:dkey-43k4.5	6: 21633286 ~ 21678263 (-)
ENSDARG00000039220	st6galnac5a	2: 9160947 ~ 9260002 (-)
ENSDARG00000060085	kcnq3	2: 43001512 ~ 43083755 (-)
ENSDARG00000036483	c1ql3b	2: 3595333 ~ 3597975 (+)
ENSDARG00000038862	kcnb2	2: 30144979 ~ 30177469 (+)
ENSDARG00000069953	kcnq5b	1: 31134942 ~ 31350148 (-)
ENSDARG00000069560	kcnh3	9: 27909927 ~ 28103097 (-)
ENSDARG00000006397	laptm4a	20: 43775793 ~ 43786515 (-)
ENSDARG00000043557	kcnk13b	20: 16703050 ~ 16709138 (+)
ENSDARG00000076789	cx32.2	20: 40724207 ~ 40729364 (-)
ENSDARG00000061288	kcnc4	8: 24928632 ~ 24965308 (-)
ENSDARG00000057433	st6galnac5b	8: 17800380 ~ 17822259 (-)
ENSDARG00000044900	prlhr2a	8: 37905666 ~ 37950194 (+)
ENSDARG00000008212	kcnk13a	17: 16336278 ~ 16342388 (-)
ENSDARG00000018923	fat2	14: 26103330 ~ 26177156 (-)
ENSDARG00000027285	kcnf1b	13: 32993911 ~ 32995365 (-)
ENSDARG00000074530	NA	13: 48224541 ~ 48295723 (-)
ENSDARG00000008140	kcnab1a	18: 34362608 ~ 34536067 (+)
ENSDARG00000061990	kcnh4b	12: 13404784 ~ 13476088 (+)
ENSDARG00000062640	kcnh8	19: 20495249 ~ 20645531 (+)
ENSDARG00000097085	si:ch211-261a10.5	15: 9278992 ~ 9294929 (-)
ENSDARG00000086471	pkig	23: 25879320 ~ 25942859 (+)
ENSDARG00000057037	kcnk12l	21: 21357309 ~ 21361287 (+)
ENSDARG00000087247	kcnab2a	11: 41540862 ~ 41699904 (+)
ENSDARG00000036458	prlhr2b	10: 41252525 ~ 41260567 (+)
ENSDARG00000062942	kcna1a	25: 19954576 ~ 19958278 (+)
ENSDARG00000029916	NA	--
ENSDARG00000041176	NA	--
ENSDARG00000089771	NA	--
ENSDARG00000037933	NA	--
ENSDARG00000088397	NA	--
ENSDARG00000091458	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000026084

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.