Fish Spatial Expression Database

GENE ID: ENSDARG00000015515

Symbol	Location	Gene type	Genome version	Species
mc4r	2: 27932781 ~ 27933864 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000015515 (mc4r), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000013789	sim1b	4: 929557 ~ 948842 (-)
ENSDARG00000035852	cart3	7: 52962632 ~ 52963493 (-)
ENSDARG00000069089	agrp	7: 35080490 ~ 35083585 (-)
ENSDARG00000044216	fto	7: 36110972 ~ 36358735 (-)
ENSDARG00000042845	oxt	5: 72087619 ~ 72093253 (+)
ENSDARG00000057679	sh2b1	3: 15358459 ~ 15392466 (+)
ENSDARG00000053449	pyya	3: 33340939 ~ 33344780 (+)
ENSDARG00000070961	lepr	6: 31184058 ~ 31233696 (-)
ENSDARG00000021607	negr1	6: 36942966 ~ 37164417 (+)
ENSDARG00000077858	asip1	6: 49975910 ~ 49983329 (-)
ENSDARG00000015515	mc4r	2: 27932781 ~ 27933864 (+)
ENSDARG00000045137	CABZ01084564.1	2: 1174778 ~ 1188707 (-)
ENSDARG00000094763	npy2r	1: 25732715 ~ 25733867 (+)
ENSDARG00000002959	gpr34b	9: 33417969 ~ 33419321 (+)
ENSDARG00000023316	sim1a	16: 1465624 ~ 1503023 (-)
ENSDARG00000074763	mrap2a	16: 37947342 ~ 37964325 (-)
ENSDARG00000069307	pomcb	20: 42968785 ~ 42972599 (-)
ENSDARG00000006868	trh	8: 54220551 ~ 54223316 (-)
ENSDARG00000043135	pomca	17: 33226955 ~ 33230039 (+)
ENSDARG00000040192	nenf	17: 45395846 ~ 45402961 (+)
ENSDARG00000062164	atrn	13: 14006118 ~ 14181984 (+)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000091992	mrap	15: 5628363 ~ 5630452 (+)
ENSDARG00000043443	kcnj13	15: 40217256 ~ 40267485 (-)
ENSDARG00000063075	soga1	23: 9400425 ~ 9492266 (-)
ENSDARG00000036704	tmem18	23: 35642061 ~ 35649000 (-)
ENSDARG00000002600	pcsk1	21: 11684830 ~ 11722343 (+)
ENSDARG00000100774	cmc4	21: 44557006 ~ 44557513 (+)
ENSDARG00000069481	ghrh	11: 15345654 ~ 15435495 (-)
ENSDARG00000027657	crhb	24: 24847683 ~ 24881996 (-)
ENSDARG00000010186	myo3a	24: 6161037 ~ 6260333 (-)
ENSDARG00000045832	cart2	25: 19441920 ~ 19443421 (-)
ENSDARG00000045893	kctd15a	25: 20357731 ~ 20381271 (-)
ENSDARG00000052046	NA	--
ENSDARG00000089939	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000015515

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.