Fish Spatial Expression Database

GENE ID: ENSDARG00000006560

Symbol	Location	Gene type	Genome version	Species
irf4a	2: 854444 ~ 879800 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000006560 (irf4a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000000767	spi1b	7: 32644673 ~ 32659353 (-)
ENSDARG00000056587	cyp2r1	7: 27455321 ~ 27697234 (+)
ENSDARG00000029204	tyrp1a	7: 74084203 ~ 74090168 (-)
ENSDARG00000070864	bcl6aa	6: 28216487 ~ 28222592 (-)
ENSDARG00000054250	crbn	6: 40456798 ~ 40466861 (-)
ENSDARG00000077858	asip1	6: 49975910 ~ 49983329 (-)
ENSDARG00000079972	nfatc2b	6: 55221490 ~ 55254786 (-)
ENSDARG00000061303	oca2	6: 37894220 ~ 38054851 (+)
ENSDARG00000006560	irf4a	2: 854444 ~ 879800 (-)
ENSDARG00000039850	dusp22b	2: 881954 ~ 898899 (-)
ENSDARG00000069295	bcl6ab	2: 10087334 ~ 10098191 (-)
ENSDARG00000007387	irf2a	1: 39859782 ~ 39880189 (+)
ENSDARG00000094344	si:dkey-222h21.8	1: 58260886 ~ 58268231 (+)
ENSDARG00000095719	si:dkey-222h21.2	1: 58353661 ~ 58357992 (+)
ENSDARG00000002445	prdm1a	16: 7430998 ~ 7443388 (-)
ENSDARG00000055610	exoc2	20: 26572456 ~ 26624042 (-)
ENSDARG00000011818	batf	20: 46572550 ~ 46646556 (+)
ENSDARG00000042577	batf3	20: 37812699 ~ 37813863 (-)
ENSDARG00000091859	si:ch73-233m11.2	8: 7055619 ~ 7078575 (-)
ENSDARG00000013539	ikzf1	13: 15957508 ~ 15994472 (-)
ENSDARG00000024771	slc24a5	18: 5213338 ~ 5227420 (+)
ENSDARG00000056396	dusp22a	18: 30511230 ~ 30564688 (+)
ENSDARG00000036168	nfatc1	19: 22216778 ~ 22304534 (+)
ENSDARG00000078912	si:ch73-24k9.2	19: 2670130 ~ 2683769 (+)
ENSDARG00000078101	nlrc9	15: 41448242 ~ 41523292 (-)
ENSDARG00000078191	zbtb46	23: 13721826 ~ 13806495 (+)
ENSDARG00000015902	stat6	23: 27078866 ~ 27123180 (-)
ENSDARG00000069196	ebf1b	21: 33724979 ~ 33995710 (-)
ENSDARG00000002593	slc45a2	21: 19445942 ~ 19484289 (+)
ENSDARG00000078147	il10	11: 21137948 ~ 21139503 (+)
ENSDARG00000068381	NA	--
ENSDARG00000076640	NA	--
ENSDARG00000086199	NA	--
ENSDARG00000087722	NA	--
ENSDARG00000088921	NA	--
ENSDARG00000091764	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
	GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350

adult

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE74652 (3 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury	GSM1924887	GSE74652
	GSE74652 (7 days-post-cryoinjury)	heart	regeneration	adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury	GSM1924888	GSE74652

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000006560

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.