Fish Spatial Expression Database

GENE ID: ENSDARG00000014479

Symbol	Location	Gene type	Genome version	Species
ptf1a	2: 29710857 ~ 29711761 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000014479 (ptf1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000021336	pax4	4: 19700308 ~ 19704628 (+)
ENSDARG00000035984	mnx1	7: 40638210 ~ 40641006 (+)
ENSDARG00000010591	foxn4	5: 19385503 ~ 19400166 (-)
ENSDARG00000004023	isl1	5: 40728613 ~ 40734045 (-)
ENSDARG00000007276	ela3l	5: 26111596 ~ 26118855 (-)
ENSDARG00000074148	rbpjl	6: 52757433 ~ 52796212 (-)
ENSDARG00000006514	her6	6: 36551083 ~ 36552844 (-)
ENSDARG00000014479	ptf1a	2: 29710857 ~ 29711761 (+)
ENSDARG00000014190	sst2	2: 5726353 ~ 5728843 (-)
ENSDARG00000069737	pou4f2	1: 36436936 ~ 36440301 (+)
ENSDARG00000018611	lbx1b	1: 31531990 ~ 31534089 (-)
ENSDARG00000003398	rbpja	1: 14454663 ~ 14464020 (+)
ENSDARG00000042106	mnx2a	9: 7724152 ~ 7728223 (+)
ENSDARG00000040253	onecutl	16: 29521736 ~ 29528198 (-)
ENSDARG00000041702	rfx6	20: 42506612 ~ 42534504 (-)
ENSDARG00000053301	insm1b	17: 41463942 ~ 41466145 (+)
ENSDARG00000055158	prox1a	17: 32822588 ~ 32865788 (-)
ENSDARG00000056292	vsx1	17: 21063403 ~ 21066105 (-)
ENSDARG00000020655	NA	17: 12924930 ~ 12926456 (-)
ENSDARG00000053298	nkx2.2a	17: 42208623 ~ 42218652 (-)
ENSDARG00000025131	lbx2	14: 5383060 ~ 5391183 (+)
ENSDARG00000003965	tlx1	13: 28267997 ~ 28272299 (-)
ENSDARG00000007982	onecut1	18: 38755023 ~ 38760271 (+)
ENSDARG00000014018	lhx1a	15: 27703409 ~ 27710575 (-)
ENSDARG00000056438	her9	23: 23399520 ~ 23401305 (-)
ENSDARG00000032963	her12	23: 21444922 ~ 21446985 (-)
ENSDARG00000090387	onecut2	21: 1698232 ~ 1742159 (-)
ENSDARG00000022569	nkx6.1	21: 19070921 ~ 19073831 (+)
ENSDARG00000033411	cabp1b	10: 41409255 ~ 41450454 (-)
ENSDARG00000017615	tlx3b	10: 22051054 ~ 22057001 (-)
ENSDARG00000069726	glis3	10: 644574 ~ 690170 (-)
ENSDARG00000063614	skor2	10: 14547941 ~ 14556978 (-)
ENSDARG00000002779	pdx1	24: 21684189 ~ 21686706 (+)
ENSDARG00000058039	bhlhe22	24: 24461341 ~ 24463346 (+)
ENSDARG00000079296	gcga	22: 11617520 ~ 11626018 (-)
ENSDARG00000030915	cpa1	25: 18448186 ~ 18454016 (-)
ENSDARG00000021339	cpa5	25: 18459924 ~ 18470695 (-)
ENSDARG00000070129	NA	--
ENSDARG00000044075	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, A to V)	embryo	baseline	shield stage, intact embryo, sectioned from animal to vegetal pole	GSM1448795	GSE59873
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE128350 (1.67dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672145	GSE128350
GSE128350 (1.17dpf whole embryo replicate1)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672146	GSE128350
GSE128350 (1.17dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672147	GSE128350
GSE128350 (1.17dpf trunk)	embryo	baseline	late embryo, 1.17dpf, trunk, untreatment	GSM3672148	GSE128350
GSE128350 (1.67dpf trunk)	embryo	baseline	late embryo, 1.67dpf, trunk, untreatment	GSM3672149	GSE128350
GSE128350 (1.67dpf whole embryo replicate2)	embryo	baseline	late embryo, 1.67dpf, whole embryo, untreatment	GSM3672157	GSE128350
GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000014479

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.