Fish Spatial Expression Database

GENE ID: ENSDARG00000007371

Symbol	Location	Gene type	Genome version	Species
slc26a3.1	4: 18824959 ~ 18835544 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000007371 (slc26a3.1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000059053	slc13a4	4: 4803698 ~ 4832149 (+)
ENSDARG00000007371	slc26a3.1	4: 18824959 ~ 18835544 (+)
ENSDARG00000043589	ca4a	5: 2241723 ~ 2282256 (-)
ENSDARG00000020217	cpsf4	3: 40289418 ~ 40295255 (+)
ENSDARG00000074231	CU138547.1	3: 13332870 ~ 13347096 (+)
ENSDARG00000022261	pdzk1	9: 5862040 ~ 5892075 (+)
ENSDARG00000086103	slc37a1	9: 19367459 ~ 19410043 (+)
ENSDARG00000058780	slc9a2	9: 6963039 ~ 6991650 (-)
ENSDARG00000060671	lct	9: 46369932 ~ 46399611 (-)
ENSDARG00000092404	NA	9: 46387419 ~ 46399611 (-)
ENSDARG00000101367	si:ch73-193i22.1	9: 46692166 ~ 46701326 (-)
ENSDARG00000042859	slc5a6a	20: 36646761 ~ 36671660 (-)
ENSDARG00000014599	slc5a6b	17: 6535694 ~ 6558596 (+)
ENSDARG00000074393	sh3yl1	17: 30604819 ~ 30652738 (-)
ENSDARG00000040198	fstl5	14: 47000351 ~ 47391084 (-)
ENSDARG00000041107	cftr	18: 20677090 ~ 20722810 (+)
ENSDARG00000030472	slc16a5a	12: 26566422 ~ 26587231 (-)
ENSDARG00000000068	slc9a3r1a	12: 33484458 ~ 33537126 (+)
ENSDARG00000024560	slc4a1b	12: 10053852 ~ 10100504 (+)
ENSDARG00000015654	ca15a	12: 4320041 ~ 4331117 (-)
ENSDARG00000002259	ca15c	12: 4338298 ~ 4346085 (-)
ENSDARG00000058498	slc9a3.1	19: 10692166 ~ 10730488 (-)
ENSDARG00000036722	slc9a3.2	19: 10738150 ~ 10771558 (-)
ENSDARG00000042293	ca4b	15: 15390882 ~ 15401917 (+)
ENSDARG00000005034	crppa	15: 34495056 ~ 34568705 (-)
ENSDARG00000043443	kcnj13	15: 40217256 ~ 40267485 (-)
ENSDARG00000044512	ca4c	21: 31275327 ~ 31290582 (-)
ENSDARG00000077462	NA	--
ENSDARG00000016381	NA	--
ENSDARG00000059425	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

late embryo

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE128350 (1.17dpf whole embryo replicate3)	embryo	baseline	late embryo, 1.17dpf, whole embryo, untreatment	GSM3672158	GSE128350

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000007371

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.