CI01000056_01941102_01951921 (MCRS1)


Basic Information

Item Value
gene id CI01000056_01941102_01951921
gene name MCRS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1940471 ~ 1951921 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_01941102_01951921.mRNA
ACGTAAAGGCGGGTGTCCCCTCTGCCGTAGCTGGAGGAGCGTCAGTCGGGCCCATGGTTTCACAGAGCAGGTCTGAGGACGAGGAGTCCAGTGCTGTGAAAAGAACCACTGCTCAGGCCTTCAGTGGAGCGGGAATGATCCCCAAACGCAGGAGCTCCTCCAGATCAATAAAGAGGAAGAAGTTTGATGATGAACTGGTTGAGAGTAGCCTCGCGAAATCTACCAGTCGGGTCAAAGGTCAGCCGGTCATTGAGCCAATCAGATGCCCTGGGAGTGACCTCGCATCCAGTGACAAGAAGAAGGGTTTAAAGTCCGGAAGCGCTCTTACGCCCCCTCTTACCATGGTGATCACTCCTTCATCAATGTCCAAACGAATGAAGAAAAACAAGCAGCCGTTACAGATAACCAAAGACCTGGGCCGCTGGAAACCCACGGATGACCTGCTGCTCATCAATGCTGTCCTACAGACTACAGATCTTACGTCAGTTCATCTGGGGGTGAAATTCAGCTGTCGCTTCACACTGCGGGAGATTCAGGAGCGCTGGTACGCTCTGCTGTATGACCCTGTCATATCAAAGTTGGCGTGGCAGGCCATGAGACAGCTGCATCCAGAGGCGATTGCTGCTATTCAGAGTAAAGCTCTCTTCAGCCAGGCAGAAGAAGCCCTGCTCGCCAAGATCACCTCTAGCAGTCAGCCTAAGCTGGAGGTTTTTCAGGATCTGCTGAACAAGCACCCAAATGTGTTTTACCCATCCCGCACTGCTAAAAATCTGCTGGTGCACTGGCAGCTGCTCAAGCAGTATTATTTACTGGAGGATCAGAGTGTTCAACCTCTGCCTAAAGGAGAGCAAGTGCTGAACTTCTCTGATGCTGAGCAGGTGGTTGATGATGCCAAACTCAAGGACAGCAGAGATGAAGTCCTGGAGCATGAGCTGATGCTTGCAGACAGACATCAGAAGCGTGAGATCAGACAGCTGGAGCAGGAGCTTCCTCGTTGGCAGGTGTTAGTGGACAGTATCACAGGCATGAATTCACCAGACTTTGATAATCAGACGCTGGCAGCTTTACGTGGACGAATGGTCAGATATCTGATGAGATCTAGAGAGATCACACTTGGTCGTGCTACTAAAGACAAGCAGATTGACGTAGATCTGTCTTTGGAGGGACCTGCATGGAAGATCTCCAGAAAACAAGGGATCATTAAACTGAAAAATAATGGAGATTTTTTCATCGCTAACGAAGGCCGGAGACCCATTTACATTGATGGACGACCAGTTTTATCTGGAAACAAGTGGAAACTCAATAACAACTCTGTTATGGAGATTGCAGGTCTTCGCTTTGTGTTCCTGATCAATCAGGAGTTGATCTCTCTCATTAAAGCTGAAGCTGCCAAGATGAACCAGCCGTAATACTGAACTCACCGGTCAAACACGATTCAGTCTGCGGCCGACGCGACACGACGGGAGATGTTCTTCCCTATCTTTATCTCAGTGTAGAGTCATAAACAGAAGACCTTCAGCACAAGATTATATGGGCTCTCGTAGCAACAGCTGAGCCTGCATCTGGAGTTCAGATCGGAGGAAAATCATTTGGAGATTTTATATGCTTATTATTTAGGCACATTTGGACTGAAAGAACTGACTGAGAACACGATAGAATTGTTGTTATTTGTATAAGTGAATCTTTTTCAATTCAGTGTTTTGTTGACTTGTACATTTTTGTTTATAATTAAAAACTCAGTAACCTTGTATTGTCTAATCAAAGACAGTATGCTAATATTCTGCTGAGACAGAACTAGTGTAAATATACAGATGACGATAGATTAAAACAGGAAAGTGTTTTAATGATGCATCTGTGTGTAAGTATAGTAATGTCTTTATGTTTGTAATTGACTTTTGTTAACGGAGTTGCAAACTTTGTGCATCACTTTGTACCTTGAAATGAACTGTTGCAATCACAGTAACCTACAAATACGTAAAAAAAAAAATACGTACAATACAAAAGTAACCTACAATACGTAAAAGTACATTTAAAAATAAA

Function

symbol description
mcrs1 Predicted to enable G-quadruplex RNA binding activity. Acts upstream of or within cilium assembly and retina layer formation. Predicted to be part of NSL complex. Is expressed in brain; eye; pronephros; and spinal cord. Orthologous to human MCRS1 (microspherule protein 1).

GO:

id name namespace
GO:0010842 retina layer formation biological_process

KEGG:

id description
K11674 MCRS1, INO80Q; microspherule protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_01941102_01951921.mRNA True 2040 mRNA 0.45 13 1940471 1951921

Neighbor

gene id symbol gene type direction distance location
CI01000056_01929886_01934773 SUOX coding downstream 5698 1928998 ~ 1934773 (-)
CI01000056_01914048_01917011 PRPH coding downstream 23460 1914048 ~ 1917011 (-)
CI01000056_01906917_01907477 NA coding downstream 31280 1906846 ~ 1909191 (-)
CI01000056_01901745_01905615 MRPL4 coding downstream 34856 1901716 ~ 1905615 (-)
CI01000056_01875964_01880351 NA coding downstream 60120 1875308 ~ 1880351 (-)
CI01000056_01981547_01984285 NA coding upstream 29005 1980926 ~ 1984285 (-)
CI01000056_01985772_01986304 NA coding upstream 33851 1985772 ~ 1986524 (-)
CI01000056_01994813_02008348 NA coding upstream 42398 1994319 ~ 2008348 (-)
CI01000056_02023335_02045088 NA coding upstream 70783 2022704 ~ 2045088 (-)
CI01000056_02057042_02058366 CNPY2 coding upstream 105121 2057042 ~ 2058366 (-)
G243253 NA non-coding downstream 13961 1926033 ~ 1926510 (-)
G243339 NA non-coding downstream 103861 1836314 ~ 1836610 (-)
G243250 NA non-coding downstream 123100 1804119 ~ 1817371 (-)
G243323 NA non-coding downstream 167477 1772039 ~ 1772994 (-)
G243267 NA non-coding downstream 203053 1734977 ~ 1737418 (-)
G243258 NA non-coding upstream 22822 1974743 ~ 1976440 (-)
G243358 NA non-coding upstream 98015 2049936 ~ 2051757 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008653 NA coding CM030126.1 CM030126.1 8021668 ~ 8036234 (+)