CI01000057_04787300_04788191


Basic Information

Item Value
gene id CI01000057_04787300_04788191
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4786712 ~ 4788191 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04787300_04788191.mRNA
GCCAAAAAAAAATTGTTTGCCTGTCATATGCAGGCTCATCCACTGCAGACAGTGTTCAACAACCCACTGATTCAGAGACAGCTATTACCTCACCTGATGCTTCTGCAGCAGGACCTTCGATGCCACTGACACCACTGTTGCCAACAGGCCTGGAAGCTTCTGACAAGGAACGTGTCCTGAAGATGAAGATTAGGAATCTAAGGGTACAGGTGTGCAAACTCAAGGCGAAAATGAGGGAAATGAACCAGCTGAAGAAGACCGGGAATGCCGGTGCTAATAAGGGGTCAGTGATGGAGCAGTTGAAGAAACTCTTACCAACCAAAACATATGCTTTTGTGAGTACACAGATACGTGCGTCTCAGCGGAAGGCTCGTGGTTTTCGATGGACCACTCAGGACAAAGCTTTCTTCTTGTCTCTGCTACGTGCCAGTCCACAATGTTACGCGCTACTGTTGAAAGTGTTTTCTATGCCATCTGTCCGCACACTGCAGAAGCTTATGAAGTCTGCTGCAGATCCACCAGTCACTGCTAATGCGGGAGCCGGAGCTGAGCAGGTCGAGCAGCCAATGGACTGTTTACTAGACAATCAGTTTGATTCCCAACAAATATCTTCTTTAAGTTCTGGTGATCATGTGATGCTGTGCTGGAGTCTGAAGTCTGAAGTCAACATCCCTGAGGGTGTCCTACCAAAACGTGTGTCCTGAACCTGCTGAGATGCATTGCTGTGTCTGTTATCCTGTAGTTGCCACATTTGGACACAGTGGCTATGTTTTTTGTTTTTGTCTCTTTTACAGACATTAAAATGCAAAAACTATTTACTGTCAAGCTGTTATATACTTATTGTCCAACATTGAAAATTTTTCTGATGCATGTTCATAATTTAATTTCATATGGTGGTATTAATTCAGTGTTTATAATGCTAATACTTGAATTTTAAAGAATTTCAACCCAAACTGACAAGGTTTCTAGAGAGCAAGGGTTTTGTGAATAAAAGTGGAAGACTTTAGCGCAAAGTCTGTAAAATAATCTGTTAAAAGGATTTGATGATTACTAGTGATTGTACATTATTCTGTCATCATCATTTAGGTTGGGTTTCAGCTTTAATATGATATTGCAGCTGATATTGCCATAGGGACAACAAAAAGCTAGTGGACTGCAGTCGCTTTCACTCCAAAATGGCGGAAGCGTAGCTGGACGCTGGTGTTGCAATGGAACCTTCCATTGTCTTTCACTTATTGTCAATATAAGTTCTTTGCTGAGACCTCAATTGTACCCGGGACAGCACAAATAAA

Function

NR:

description
PREDICTED: THAP domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04787300_04788191.mRNA True 1292 mRNA 0.42 2 4786712 4788191

Neighbor

gene id symbol gene type direction distance location
CI01000057_04743808_04746558 NA coding downstream 38615 4743406 ~ 4748097 (-)
CI01000057_04728914_04731946 NA coding downstream 52989 4728872 ~ 4733723 (-)
CI01000057_04718947_04721031 NA coding downstream 65636 4718918 ~ 4721076 (-)
CI01000057_04657451_04663499 NRAMP-BETA, SLC11A2, NRAMP-ALPHA coding downstream 123213 4657262 ~ 4663499 (-)
CI01000057_04647822_04649004 NPFFL coding downstream 137708 4647773 ~ 4649004 (-)
CI01000057_04794580_04834143 COL2A1 coding upstream 5326 4793517 ~ 4834429 (-)
CI01000057_04861618_04865902 ITGA7 coding upstream 73427 4861618 ~ 4865902 (-)
CI01000057_04866089_04878847 ITGA7 coding upstream 77898 4866089 ~ 4878847 (-)
CI01000057_04891502_04906844 ELMO2 coding upstream 102044 4890235 ~ 4906844 (-)
CI01000057_04916382_04926437 ARFGAP1 coding upstream 128191 4916287 ~ 4926437 (-)
G246676 NA non-coding downstream 5660 4780766 ~ 4781052 (-)
G246669 NA non-coding downstream 36571 4749815 ~ 4750141 (-)
G246662 NA non-coding downstream 61534 4724516 ~ 4725178 (-)
G246658 NA non-coding downstream 72353 4714091 ~ 4714359 (-)
G246600 NA non-coding downstream 131273 4654977 ~ 4655439 (-)
G246691 NA non-coding upstream 13481 4801672 ~ 4804379 (-)
G246703 NA non-coding upstream 74613 4862804 ~ 4863182 (-)
G246682 NA non-coding upstream 148760 4936951 ~ 4937172 (-)
G246750 NA non-coding upstream 157207 4945398 ~ 4945752 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 889021 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2865291 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2981559 1801528 ~ 1806454 (-)
G244358 NA other downstream 4215684 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 140553 4927533 ~ 4931420 (-)
G246780 NA other upstream 422919 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1135349 5923540 ~ 5927295 (-)

Expression


Co-expression Network