G251193


Basic Information

Item Value
gene id G251193
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1475075 ~ 1476569 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU285126
GGTCAGAGGTCACAAGTTCACTGAGGAGTGGAAAGTCTCAGATTGTATGGTTAATCATTAGAAAAATCAGTATTTGCAAATATATGTCATTGCATGTGGCATTTATTTTTAAGAAAAGTATGCTTATGATATGATCAGTTCTGAGAGCTCTACAGTAGCATCATTTGTTTGCTTCAGATAACAAAATATCAAACCAAGTGGCAATTTTACAATTTTCAGAATTGCATAAGAGTCCAAATACTTTTGGGGCCGCTGTATTGATTACTGGTGTTTACCTAGCCCGTCCTACGATTACACTCTGTGCCCACGGCTGCATGATCTCCAGAAAAGAGCCATGGTCGAAGAACCCGCTCACCCACGCACCCTTAGTGTTCAGACTGGGACGTCCCGCTAGCATCCAGCGTGGGTCATATGGTGCCTTGGTAGGAACAAACTCCACTAGCCGATCAATGGGATCTTTAGCATTGAGCATTGGCACAGGACTAGACATATTCTTCGGCATGTAGGACAGCCAGTGAAGTAATGTAAACACTCCCTCAAAATCATCGCACACAGTGGTGTGTGTGACTCCATTATTGTGCATGATCTGTACTCCACCTAGCTGGTTATTGGAGGTGTACACCTCACGACCCAGAACCTGTAGAGAAAGAGCAAAGAGGTGAATGAGTTAATGGCTGGCTGCCATGCAAATTACAGGAGTCAGGCTACCCAAGTTTTTAACAGTCCACTTGGAAAAGTCACCAAGCCACTACTTCTGAAGAGAAACTAGCTGCTGGATTGTATAAAGTAGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU285126 True 793 lncRNA 0.44 3 1475075 1476569

Neighbor

gene id symbol gene type direction distance location
CI01000059_01443666_01454016 AATF coding upstream 21059 1443666 ~ 1454016 (+)
CI01000059_01437393_01441869 LHX1B, LHX1 coding upstream 31794 1436230 ~ 1443281 (+)
CI01000059_01351954_01355411 MRM1 coding upstream 119189 1351954 ~ 1355886 (+)
CI01000059_01293199_01294944 FZD9B, FZD9 coding upstream 179776 1292871 ~ 1295299 (+)
CI01000059_01257411_01265603 NA coding upstream 208790 1256593 ~ 1266285 (+)
CI01000059_01831592_01831849 NA coding downstream 354323 1830892 ~ 1833594 (+)
CI01000059_01893067_01914170 NA coding downstream 416498 1893067 ~ 1914246 (+)
CI01000059_01985427_01999889 PJA2 coding downstream 508858 1985427 ~ 1999938 (+)
CI01000059_02068570_02070710 NA coding downstream 592001 2068544 ~ 2071924 (+)
CI01000059_02087382_02094472 SLC31A1 coding downstream 610766 2087335 ~ 2095736 (+)
G251188 NA non-coding upstream 7895 1463764 ~ 1467180 (+)
G251197 NA non-coding upstream 57225 1417617 ~ 1417850 (+)
G251144 NA non-coding upstream 132582 1341555 ~ 1342493 (+)
G251123 NA non-coding upstream 189345 1285516 ~ 1285730 (+)
G251122 NA non-coding upstream 192328 1282323 ~ 1282747 (+)
G251196 NA non-coding downstream 16222 1492791 ~ 1494531 (+)
G251191 NA non-coding downstream 25702 1502271 ~ 1507955 (+)
G251224 NA non-coding downstream 61379 1537948 ~ 1538268 (+)
G251234 NA non-coding downstream 70875 1547444 ~ 1547879 (+)
G251235 NA non-coding downstream 75928 1552497 ~ 1552728 (+)
G251017 NA other upstream 407718 1056252 ~ 1067357 (+)
G251046 NA other upstream 495857 978741 ~ 979218 (+)
G251249 NA other downstream 151197 1627766 ~ 1661390 (+)
CI01000059_02133197_02134625 NA other downstream 654923 2133003 ~ 2135347 (+)
G252732 NA other downstream 1726170 3202739 ~ 3203091 (+)
G253654 NA other downstream 3761190 5237759 ~ 5238233 (+)

Expression


Co-expression Network