Fish Transcriptome and Expression Database

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model fish

XLOC_010233

Basic Information

Item	Value
gene id	XLOC_010233
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	46276944 ~ 46282156 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021750
TCGTAGGTTTGAAGCCCAGGAGCAAAGGTCAAAACCCCCTCCAGCTTCAGAGGCATGTCAGGTCACGCTGGCCACATACTGCTGCTCACCCCGTTTAGACCACAAAAAACACTACTAACAAGAAATGTGTGCACACCACGCAGctGTCGGTGTGGTGCTGAACATTGTGGGTTGTGCTTGAGGCGGGTGTCCGGGTCATGAGGGT

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00021750	True	205	lncRNA	0.54	2	46276944	46282156

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010232	NA	coding	upstream	6056	46269724 ~ 46270888 (+)
XLOC_010231	bola1	coding	upstream	67089	46205693 ~ 46209855 (+)
XLOC_010230	sv2a	coding	upstream	74239	46111849 ~ 46202705 (+)
XLOC_010229	mtmr11	coding	upstream	172934	46000956 ~ 46104010 (+)
XLOC_010228	NA	coding	upstream	286102	45988431 ~ 45990842 (+)
XLOC_010234	nr2f5	coding	downstream	12181	46294337 ~ 46327301 (+)
XLOC_010235	rpz	coding	downstream	119420	46401576 ~ 46423842 (+)
XLOC_010236	rpz6	coding	downstream	148471	46430627 ~ 46435038 (+)
XLOC_010237	rpz3	coding	downstream	171020	46453176 ~ 46465096 (+)
XLOC_010238	rpz5	coding	downstream	210600	46492756 ~ 46496293 (+)
XLOC_010225	NA	non-coding	upstream	464620	45787042 ~ 45812324 (+)
XLOC_010220	NA	non-coding	upstream	585724	45455980 ~ 45691220 (+)
XLOC_010240	NA	non-coding	downstream	273238	46555394 ~ 46569152 (+)
XLOC_010241	NA	non-coding	downstream	274187	46556343 ~ 46569484 (+)
XLOC_010246	NA	non-coding	downstream	508521	46790677 ~ 46794172 (+)
XLOC_010247	NA	non-coding	downstream	514270	46796426 ~ 46797326 (+)
XLOC_010249	NA	non-coding	downstream	544432	46826588 ~ 46830237 (+)

Expression

Co-expression Network