G256951


Basic Information

Item Value
gene id G256951
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 9126780 ~ 9280018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU291641
TTTTTTTTTTATAAAAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
>TU291642
GGGTTTTTGGGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAG
>TU291639
AATAACTATTTGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAATTAACAAGTTATGAAGTAGAATATCCAGCTTCCACCAGAATTACGAAGATTCAAC
>TU291637
AATTATTAAAATGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAAAAAAAAAAAAAAGTC
>TU291640
TATATAAATAAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAAAAAAAAAAAAAAGTC
>TU291644
TATTATTAAAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291641 False 285 lncRNA 0.01 3 9126780 9280018
TU291642 False 290 lncRNA 0.03 3 9172978 9222939
TU291639 False 298 lncRNA 0.08 3 9183315 9265424
TU291637 False 282 lncRNA 0.02 3 9197239 9224417
TU291640 False 281 lncRNA 0.02 3 9197239 9257478
TU291644 True 280 lncRNA 0.01 3 9197239 9265474

Neighbor

gene id symbol gene type direction distance location
CI01000059_08541617_08550032 LHX3 coding downstream 576748 8541161 ~ 8550032 (-)
CI01000059_08483765_08492276 NA coding downstream 633962 8483445 ~ 8492818 (-)
CI01000059_08434015_08446002 NACC2 coding downstream 680778 8433695 ~ 8446002 (-)
CI01000059_08382830_08423907 NA coding downstream 702056 8382372 ~ 8424724 (-)
CI01000059_08360308_08360726 NA coding downstream 765973 8359765 ~ 8360807 (-)
CI01000059_09346204_09347082 NA coding upstream 66170 9346188 ~ 9348023 (-)
CI01000059_09706218_09708197 TRIM32 coding upstream 425252 9705270 ~ 9709619 (-)
CI01000059_09783667_09789126 NA coding upstream 503611 9783629 ~ 9789298 (-)
CI01000059_09797419_09887264 PAPPAA, PAPPA coding upstream 517362 9797380 ~ 9887264 (-)
CI01000059_09908635_09925766 ZNF618 coding upstream 627869 9907887 ~ 9925766 (-)
G256947 NA non-coding downstream 10601 9115978 ~ 9116179 (-)
G256929 NA non-coding downstream 75146 9051417 ~ 9051634 (-)
G256883 NA non-coding downstream 114033 8963296 ~ 9012747 (-)
G256820 NA non-coding downstream 120416 8956469 ~ 9006364 (-)
G257020 NA non-coding upstream 87789 9367807 ~ 9369543 (-)
G257031 NA non-coding upstream 104655 9384673 ~ 9415201 (-)
G257156 NA non-coding upstream 311568 9591586 ~ 9593365 (-)
G257158 NA non-coding upstream 314474 9594492 ~ 9613237 (-)
G257159 NA non-coding upstream 314989 9595007 ~ 9613501 (-)
G256890 NA other downstream 144663 8981696 ~ 8982117 (-)
G255092 NA other downstream 2883988 6236106 ~ 6242792 (-)
G254203 NA other downstream 3888481 5237786 ~ 5238299 (-)
G253914 NA other downstream 4372698 4753538 ~ 4754082 (-)
G253013 NA other downstream 5654871 3471475 ~ 3471909 (-)
G257014 NA other upstream 174198 9454216 ~ 9599008 (-)

Expression


Co-expression Network