XLOC_010249


Basic Information

Item Value
gene id XLOC_010249
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 46826588 ~ 46830237 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022036
CTTCATTTCACCttcactatccatccatcctgaGAAAGCTGTACTTTGAAGATGGTCGTCTCAAGGTCTTCCCCAAAGATGAACTCTAAAGGAATGTTCCACTTGGAGTCTTTCAGCCAAGGATCGCCGAGAAGCTTCAATATGTTTGGATGCCGAGCATTACTGCTGTTGTTTGCTGATGAGGCCCAGAGGAACTCTCTTGAGAGCAGCCCATGCGTCTCCATATTTCTCCTTGTATATTTTCCCAAAGCAGCCTGCAGCTAGTGTTTGTGTGGAGTACGCCATCTATTGAGGAGTTCACAGCAGAATGACAAACTgaTATGAGGTGGAATAACATTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022036 True 341 lncRNA 0.45 4 46826588 46830237

Neighbor

gene id symbol gene type direction distance location
XLOC_010248 CABZ01027551.1 coding upstream 18574 46807214 ~ 46808014 (+)
XLOC_010247 NA coding upstream 29262 46796426 ~ 46797326 (+)
XLOC_010246 NA coding upstream 32416 46790677 ~ 46794172 (+)
XLOC_010245 rab11al coding upstream 84809 46725087 ~ 46741779 (+)
XLOC_010244 rab25b coding upstream 112536 46695777 ~ 46714052 (+)
XLOC_010250 thsd7ab coding downstream 38773 46869010 ~ 47178134 (+)
XLOC_010251 CR848802.1 coding downstream 182104 47012341 ~ 47012457 (+)
XLOC_010252 NXPH1 coding downstream 373185 47203422 ~ 47204301 (+)
XLOC_010253 ica1 coding downstream 377454 47207691 ~ 47232146 (+)
XLOC_010254 col28a1b coding downstream 478619 47308856 ~ 47344147 (+)
XLOC_010241 NA non-coding upstream 257104 46556343 ~ 46569484 (+)
XLOC_010240 NA non-coding upstream 257436 46555394 ~ 46569152 (+)
XLOC_010233 NA non-coding upstream 544432 46276944 ~ 46282156 (+)
XLOC_010255 NA non-coding downstream 553558 47383795 ~ 47389378 (+)
XLOC_010257 NA non-coding downstream 933988 47764225 ~ 47764819 (+)
XLOC_010258 NA non-coding downstream 1168595 47998832 ~ 47999411 (+)
XLOC_010259 CR388140.1 non-coding downstream 1193056 48023293 ~ 48023408 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_00980123_00987611 NA coding CI01000027 null 979155 ~ 987884 (+)