Fish Transcriptome and Expression Database

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model fish

XLOC_010272 (CABZ01059142.1)

Basic Information

Item	Value
gene id	XLOC_010272
gene name	CABZ01059142.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	49547771 ~ 49547886 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020297
ACTAGTAtgtagctctctgcaactctcacatggtcgtccACTGAAGGTAAGCAGGGCTtcacctggtcagtacctggatgggagaccacatgggaaaagttaggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106244

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00020297	True	116	rRNA	0.51	1	49547771	49547886

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010271	LO018128.1	coding	upstream	294197	49249669 ~ 49253574 (+)
XLOC_010270	NA	coding	upstream	383679	49161419 ~ 49164092 (+)
XLOC_010269	plcl2	coding	upstream	387590	49088698 ~ 49160181 (+)
XLOC_010268	CABZ01068499.1	coding	upstream	529893	49005321 ~ 49017878 (+)
XLOC_010267	si:ch73-31d8.2	coding	upstream	791074	48753664 ~ 48756697 (+)
XLOC_010273	NA	coding	downstream	53723	49601609 ~ 49618621 (+)
XLOC_010274	rab5ab	coding	downstream	99516	49647402 ~ 49661406 (+)
XLOC_010275	ube2e2	coding	downstream	458259	50006145 ~ 50078469 (+)
XLOC_010276	nr1d2a	coding	downstream	541531	50089417 ~ 50111057 (+)
XLOC_010277	si:ch211-231m23.4	coding	downstream	615478	50163364 ~ 50164281 (+)
XLOC_010264	NA	non-coding	upstream	870737	48668314 ~ 48677034 (+)
XLOC_010261	CU183074.1	non-coding	upstream	1290641	48257013 ~ 48257130 (+)
XLOC_010260	CU929195.1	non-coding	upstream	1389348	48158309 ~ 48158423 (+)
XLOC_010259	CR388140.1	non-coding	upstream	1524363	48023293 ~ 48023408 (+)
XLOC_010278	NA	non-coding	downstream	687494	50235380 ~ 50260317 (+)
XLOC_010280	NA	non-coding	downstream	751794	50299680 ~ 50347897 (+)
XLOC_010282	NA	non-coding	downstream	914358	50462244 ~ 50463641 (+)
XLOC_010283	NA	non-coding	downstream	921998	50469884 ~ 50472417 (+)

Expression

Co-expression Network