CI01000063_02287935_02290399


Basic Information

Item Value
gene id CI01000063_02287935_02290399
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2286341 ~ 2291640 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_02287935_02290399.mRNA
CTTTAAAAACAAAGGATCAGGAGCAGAGGCCGGTGGGAGTAGAGGAGCATGAGGAGAGTATACATGCAGGGATAAAGCAACAAGCCTCCCCGCCGCCTCATACTCCAGCAGGGTGCAGGTCAGAGGTCACTGAATGAACTTGGATTGGGAAAGTATGCGGTCACATTGATTACACAAACCTGATTAAGGTATGTTGCTTCTGTAAGTTTTCAGTAGTAGAAATTTTTAAAAAATTAGTTTTTCTCCTTGGACCGCTGATTTGATTTTTAGACCTGACACTAATCAGGTAAAGGGTGCTTATCACACATGGTGAGTCTTTAGTGGCAGTTTAGCGTGAAATGTGCAACACAGCCAAAGCAAAGCTTGTCTTGGTTTGATGGAATGAGACTTGAGACTTCACCCATTTAAAATGATTTTCATTATTTTAAATACACTCAAGCACAAATTAAAAGTCTGAGCTGACCCCAATTCTAAAAAAGATCAAATTAACTACTAATAGACTCTAATTGTGGGTGGCCCTTTTTTACTAAATTAAATTATTATTATTTTTAAACTATTACATTTTTTCTTTTCTTTTTTATCAGTTAAATAATTAAATATTATTATTTTTTAATTAATTTTCTCTTATTTATTTTTTATTGGCTTAACTATTAATCAAATTGTTTACCAAATGTTTTTATCGATTAACTTTTAGGTTAGTTTTCGATATGAAAAAAGGAGTGAAAGTATACTTTCATAGAAATTTGGGCTTCTTTTTTCAAATTTCATGTCATTGTGAAATGTACACTCAGTGTCTCTTTGCTTTTACAATCCGAGTCTGGGAAAATGCTCTGGTAAATACACATACTTTTGTAACAGGATACCCTTAAAGTGAACGACTGAAATACTGTAGAGTGCAAGTGAATGACTGAGGAGTCAAAGCTGAATTTAGGCATTTAAAGGGCACTACACATAATAATTAAATAAAAGACTCATTAAAAACTTTCAGATCAAAAGTTGATCATTAATGTTTCATGCCTGTGCCAAAATCTTATACCGCAACCATTTCGTCACTTTCTTTTTAGGAACTGAAATGTTTACAGATATATTTTGTTAACATTTGGATCTTCCAGAGCATGTAGCAGCAGATTCTCTGGGCCTTACTAAAGAAGGAGCACAAGGTTTCAGTCCTAAACCGCAGAGATATCTGCAGCCAGAGCTGAATTTATTTCTGAACTGATTTTTTTTCAGAAGCACAAACCCAGAACAACTGTGAAGCCCAGAATCTTTGACCACATATGCAGCAGAGGTTTTCAGGAATTGGAGTCATGCATATTTTCAGCTCACATTTATCTTCACCGAATCTTTCTGGATATGAACAAAGACCGATGGCCAAAATGGGACATAGCTGAATGTGTGTGCCTTTTGAGAAACTGTGAAAAGAAACTTTCCACTCAACTGCGGTTTTTTTTCCGTTGAGGTATTTTGAAGCTTGAACGGTGATACGTGTATAATTTGCTTTCTTACATTGTTCTCACCATTTTTTAAAAATAATTTTTGTGGAGTTTTTTTTTTTACTGGCTTTGGAAATTTACGATTTGTACCTGGAGAAGTCATGAACTTGGGCAAGTTGTCTGGCCTGAAGGGCCTGGTTTCCCACTCCTCAGGAAAGCGTCGATTTAAAGGTGACCTCACCCCGGACATGATCAGTCCCCCATTGGGTGACTTCCGCCACACCATGCACGTGGGCCGTGGAGGGGACGTGTTCGGGGACACCTCGTTCCTCAGCAATCATGGTGGAGCAGGAAATAACGCAGATGGAGACTCCTCCTCTACTTCAGAGAAGAATGAGGGATTCTTCTCCCGCACGCTTCGCCATGTTCGCAAGACCCCCGACAGGCACCGCGGCGGATCCAAGGATCTTTCACCCCCACCTCCACCCATTTCTCCAATCATAAAGAATGCCATTTCCCTACCCCGGCTGGACGTGGACTCACCCAATGGCTGTCCTGTGAAAGTGCTTTTTCCTAGTACACCCAAAACACCAGAGAACTCCACATGCTTATATGGTTTGGAGTCTGGCTTTGTGACTTTGCCGAGACTGTCACGCACTGAGCGTCCAGCCCAGGGCAGCTCTCCCCCAGCCTGCCCTCCTGAAATTCATAGAGGCTCGCTCACGGACACGGGTATCCCGTCCTTCCCCTGTTCAGACTCCGTCAGTCCTTCTGACTCCATGAACTCTTTCACCCTTGATCTGGGCCCTTCCCTTATGTCTGAAGTCTTTGCCATGATTGACAGCCCTGTGTGTGAAATGGCCAGTCCCATCAGTGAAAAGTCACCGTCCACCGATAATAACTCTGAAGTGGACTCGGACGCAACCACGTCCTTGGTGGACTCTCTCCTGAGAGAAGATGATGACGGTAGGACGCGGTTGTATGGAGGAGAGTGGAAGCATTCAGACTTTTTGAATGGTGAGTCACCCAAAAAATCCATGCTGGGGGATCAGATGCGCTCCTCCTCTGTTGAGGATCACGGCATGGAGCCGGAGAGTTTCCAGAGGGCTGCTGATGTGCTGGCACGTCATTATGGGAGTGGAGGACTCAGGAATACAAACACCAACAACTCTCACAGGAGAGGACTGTACAACTATGCTGATGAGGAGGATGAGATCAAAGTCTAACACTACGAGATGCCTAAAGTCCAAATCACACAGCACTTTTAAAGGGATAGTTCAGACAAAAAATGAAAATTCTGTCATTATTTATCCACCCTCATATTATTCCAAACTCATTTCTTCTGTGGAACACAAAAGACCACTCTTTTCGTTATAATGGAAGTGAATGAGGACTGGCCCTGTCAAGCTCCATAATGCTAAAAAGCACAATACAGTTATCATAAAAGTAGACTATATGACTTGTGTGATAAATATTCCAAGTTTCTGAAGCAATTTTATAGCATGATGTGATAAAGCGGCAGAAATTCCTGGTCAGTTCAATTTGTGAACAAATCATTCAAACTGGTTTTCTGAAAAGGATACACTGATTTATTGAAAAGATCAGACTTAAACAATTTGTTCATGAATCTGCCATTGCTACTTCCAATATGAATGTGCTAAGGAGAACTAGGACACATGTCAAGATTTTCAGTGAATAACACAAATAATTCATAATTTAAAGGGATAGTCCACCCAAAAATGAAAATTCTATCACTATGTACTCACCCTCATGTCGTACCAAAACTGCATGACTTCCTTTCTTCTGTGGAACTCAAAAGAAGATATTTTGAAGAATGTTTTTGTCATATAATTAAAGTGGGGTTCAACATTGTTTGGTTCCCAATGTTCTTCAAATTATTTGGGAAGGTTTGGAATGAGAAGAGGGTGAGTAAACAATAACAGAATTTTATTTTTTTGGGTGGAGTACCTCTTTAATAACAATTAAATAATAAAATTTAAATGTCACAATAATGAGATATGACTCCAGAAGACTTAGAATACAACCCACAAGTCAAATGGACTACTTTTGTTAAACTTTTGGTGCATTTTTGTTATTTTGGAGTTTGACAGCCCCAGTTCTCATTCAGGATCACTATATGGAAAAGAGCAGCAAGGATATTCACCTAAATCTCTCCTTTTGTGTTCCACAAAAAAGATCATTCAAGTTCGTTATGGCATGAGGGTGATGACAGAATTGGAATTTTTGGATGAACTATTCCTTTAATAACATTTCTAAATGTTTGCAATGGGGAAAATGAAAGCTAACGGATTGTAATTTAACCCTACATTCATGGTGTTTTGAAGAAAGTATTGCATATAAAAAAAAAACATATGAGTGGATCTACAAGCACATAAACTAATACTAGCATCTCAAATTTTCACTTTGTTTGATCTCATCCCTAAAATATTAGCTTTGTTCCAGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_02287935_02290399.mRNA True 3900 mRNA 0.40 2 2286341 2291640

Neighbor

gene id symbol gene type direction distance location
CI01000063_02259693_02263566 NA coding upstream 22576 2259479 ~ 2263765 (+)
CI01000063_02207083_02208978 MAFF, MAFFL coding upstream 77197 2207083 ~ 2209144 (+)
CI01000063_01950136_01991996 SHISA9A coding upstream 294213 1948174 ~ 1992128 (+)
CI01000063_01824468_01849446 NA coding upstream 436887 1822854 ~ 1849454 (+)
CI01000063_01784971_01788682 NA coding upstream 497443 1784971 ~ 1788898 (+)
CI01000063_02329534_02344024 ZC3H7B coding downstream 37894 2329534 ~ 2344971 (+)
CI01000063_02350026_02353930 TEFA coding downstream 58386 2350026 ~ 2354112 (+)
CI01000063_02362425_02374879 ACO2 coding downstream 70785 2362425 ~ 2374987 (+)
CI01000063_02376409_02377664 CSDC2, CSDC2A coding downstream 84769 2376409 ~ 2377690 (+)
CI01000063_02380854_02399161 NA coding downstream 89214 2380854 ~ 2399579 (+)
G262625 NA non-coding upstream 38935 2247167 ~ 2247406 (+)
G262624 NA non-coding upstream 42795 2243200 ~ 2243546 (+)
G262623 NA non-coding upstream 45663 2240336 ~ 2240678 (+)
G262440 NA non-coding upstream 46934 2238675 ~ 2239407 (+)
G262397 NA non-coding upstream 48456 2237681 ~ 2237885 (+)
G262439 NA non-coding downstream 8538 2300178 ~ 2303290 (+)
G262352 NA non-coding downstream 22069 2313709 ~ 2318205 (+)
G262651 NA non-coding downstream 35393 2327033 ~ 2327712 (+)
G262442 NA non-coding downstream 87273 2378913 ~ 2379706 (+)
G262671 NA non-coding downstream 209152 2500792 ~ 2563085 (+)
G262423 NA other upstream 43376 2241408 ~ 2242965 (+)
G262194 NA other upstream 1141334 1139352 ~ 1145007 (+)
G262060 NA other upstream 1575787 710110 ~ 710554 (+)
G261984 NA other upstream 1618959 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 1728007 533801 ~ 558334 (+)
G262436 NA other downstream 421975 2713615 ~ 2714517 (+)
G265391 NA other downstream 3622143 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 4043638 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005314 cdc42ep1a coding NC_007123.7 CM002896.2 19240610 ~ 19250854 (-)
bowfin (Amia calva) AMCG00014986 NA coding CM030128.1 CM030128.1 41811171 ~ 41813199 (+)