G262440


Basic Information

Item Value
gene id G262440
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2238675 ~ 2239407 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297894
GCCAGCTGGATGTGCCAGTCTTGGTGCCCATCTTGTTTCCAGGACTTCTGTGCCAGTGATCTGATGGCCCTTGAGGAGGCACACCCAAACCTTCCCCTCCCAGCATCTCATACTGGGAATATGGGGAACCACCTCTCATTTTGAGAGGAGCAGCAATGGGACCTATATATCAGAGGAAAACAAACAATTACAGTCAAACTTGTATCAGACATTGTATATAAACTCCTTTTTATAACTCAATTTCGTAGGCATCATAAAAAAGGTAATGGACCATTTTTAAGGAGAATGCTATCAGGAGGTGAGGGGGCTGGGGAATGACCTTCCATCATCCACTTGAAACGAGACTGCTGCCCCCCACCGTCTTTAAGCCCAGCTGGGCCACCAACCATGGGACCCAATTCCAGACCGGAGAGGCTCACTCCAGGCCCAAACCCTTAAAGACACAGAATGGGACAGAAAAGGGCACATTATTAAAAAAAACACATCATCAAGCTCCCACATGCATTGACACTAGTGGTCGATCGATATATTGCTAAGGGTGATATATATCGGCTGATATTTGGCATTTTTTAATTAACAGCATTTTCTGTTTGATAAGTGTTGGAAGCGGACTGTTATTTGACCCGAGCGCAGATGCACAGATCATCCATTCTCCATCTTCAGTAGTATACTGCTTTGTTTAACAGTCCTGTCTATGAAAATAGAGAGAATATTAAACAGAACCATTAAACGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU297894 True 733 lncRNA 0.44 1 2238675 2239407

Neighbor

gene id symbol gene type direction distance location
CI01000063_02207083_02208978 MAFF, MAFFL coding upstream 29531 2207083 ~ 2209144 (+)
CI01000063_01950136_01991996 SHISA9A coding upstream 246547 1948174 ~ 1992128 (+)
CI01000063_01824468_01849446 NA coding upstream 389221 1822854 ~ 1849454 (+)
CI01000063_01784971_01788682 NA coding upstream 449777 1784971 ~ 1788898 (+)
CI01000063_01739754_01764028 RHBDF1B, RHBDF1, RHBDF1A coding upstream 473903 1739244 ~ 1764772 (+)
CI01000063_02259693_02263566 NA coding downstream 20072 2259479 ~ 2263765 (+)
CI01000063_02287935_02290399 NA coding downstream 46934 2286341 ~ 2291640 (+)
CI01000063_02329534_02344024 ZC3H7B coding downstream 90127 2329534 ~ 2344971 (+)
CI01000063_02350026_02353930 TEFA coding downstream 110619 2350026 ~ 2354112 (+)
CI01000063_02362425_02374879 ACO2 coding downstream 123018 2362425 ~ 2374987 (+)
G262397 NA non-coding upstream 790 2237681 ~ 2237885 (+)
G262362 NA non-coding upstream 14782 2221748 ~ 2223893 (+)
G262359 NA non-coding upstream 35105 2199765 ~ 2203570 (+)
G262540 NA non-coding upstream 199469 2038984 ~ 2039206 (+)
G262538 NA non-coding upstream 202630 2035833 ~ 2036045 (+)
G262623 NA non-coding downstream 929 2240336 ~ 2240678 (+)
G262624 NA non-coding downstream 3793 2243200 ~ 2243546 (+)
G262625 NA non-coding downstream 7760 2247167 ~ 2247406 (+)
G262439 NA non-coding downstream 60771 2300178 ~ 2303290 (+)
G262352 NA non-coding downstream 74302 2313709 ~ 2318205 (+)
G262194 NA other upstream 1093668 1139352 ~ 1145007 (+)
G262060 NA other upstream 1528121 710110 ~ 710554 (+)
G261984 NA other upstream 1571293 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 1680341 533801 ~ 558334 (+)
G261700 NA other upstream 1964225 252412 ~ 274450 (+)
G262423 NA other downstream 2001 2241408 ~ 2242965 (+)
G262436 NA other downstream 474208 2713615 ~ 2714517 (+)
G265391 NA other downstream 3674376 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 4095871 6335618 ~ 6338283 (+)

Expression


Co-expression Network