G262540


Basic Information

Item Value
gene id G262540
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2038984 ~ 2039206 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU298002
CCGTTCTTTAAAAGTGACATCGCCAACAACGTTGTCGTCTGTACGTGAAAAATGCAAAGGAAAAACTTTTCCATTTTTAGTAGGCCTACATTGTTGTTGTGTAAATGCACCATTAAAAGTCTGATTTTGCTGAAATGCCTATAATGGTTTCACCCCATAGAGTGTGACAACATGCCCCACTTTTAGGCAGTGGTTCTCAACAGAGGGCCAAGGCCCATTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298002 True 223 lncRNA 0.42 1 2038984 2039206

Neighbor

gene id symbol gene type direction distance location
CI01000063_01950136_01991996 SHISA9A coding upstream 46856 1948174 ~ 1992128 (+)
CI01000063_01824468_01849446 NA coding upstream 189530 1822854 ~ 1849454 (+)
CI01000063_01784971_01788682 NA coding upstream 250086 1784971 ~ 1788898 (+)
CI01000063_01739754_01764028 RHBDF1B, RHBDF1, RHBDF1A coding upstream 274212 1739244 ~ 1764772 (+)
CI01000063_01692878_01697954 NA coding upstream 340906 1692394 ~ 1698078 (+)
CI01000063_02207083_02208978 MAFF, MAFFL coding downstream 167877 2207083 ~ 2209144 (+)
CI01000063_02259693_02263566 NA coding downstream 220273 2259479 ~ 2263765 (+)
CI01000063_02287935_02290399 NA coding downstream 247135 2286341 ~ 2291640 (+)
CI01000063_02329534_02344024 ZC3H7B coding downstream 290328 2329534 ~ 2344971 (+)
CI01000063_02350026_02353930 TEFA coding downstream 310820 2350026 ~ 2354112 (+)
G262538 NA non-coding upstream 2939 2035833 ~ 2036045 (+)
G262537 NA non-coding upstream 3645 2035121 ~ 2035339 (+)
G262536 NA non-coding upstream 4589 2033972 ~ 2034395 (+)
G262535 NA non-coding upstream 5643 2033062 ~ 2033341 (+)
G262534 NA non-coding upstream 6026 2032592 ~ 2032958 (+)
G262359 NA non-coding downstream 160559 2199765 ~ 2203570 (+)
G262362 NA non-coding downstream 182542 2221748 ~ 2223893 (+)
G262397 NA non-coding downstream 198475 2237681 ~ 2237885 (+)
G262440 NA non-coding downstream 199469 2238675 ~ 2239407 (+)
G262623 NA non-coding downstream 201130 2240336 ~ 2240678 (+)
G262194 NA other upstream 893977 1139352 ~ 1145007 (+)
G262060 NA other upstream 1328430 710110 ~ 710554 (+)
G261984 NA other upstream 1371602 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 1480650 533801 ~ 558334 (+)
G261700 NA other upstream 1764534 252412 ~ 274450 (+)
G262423 NA other downstream 202202 2241408 ~ 2242965 (+)
G262436 NA other downstream 674409 2713615 ~ 2714517 (+)
G265391 NA other downstream 3874577 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 4296072 6335618 ~ 6338283 (+)

Expression


Co-expression Network