CI01000063_02788126_02820510 (CASKIN2)


Basic Information

Item Value
gene id CI01000063_02788126_02820510
gene name CASKIN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 2788126 ~ 2820588 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_02788126_02820510.mRNA
TTTTTCAGCTCTTCATCATGCGGCTCTCACTGGCACCACTGACCTCTTGTCTCTGCTGTTGGAAGCACAGGCCACTGTGGACATTAAAGACAGTAATGGAATGCGTCCATTGCACTATGCTGCCTGGCAGGGGAAGGCTGAGACTGTACTTATGCTTCTGAGAGCTGGAGCTTCTGTGAATGGGGCTTCACAAGATGGACAGATCCCTCTCCACCTGGCTGCACAATACGGACACTATGAGGTGTCTGAAATGCTACTACAACACCAGTCCAACCCCTGTACTGTCAACAAGGTGAAGAAGACCCCTCTGGACCTGGCCTGTGAGTTTGGCAGGCTTAAGGTGACCCAGCTGTTGTTAAACAGTAACATGGTGGTAGCTCTCTTAGAAGGGAACGGCAGGGATAACACCCCCCTGCATCTTGCTGCCCGCAACGGCCATAAGGACATTATCAGAGGAGAGGTGAAAAAACCTAGTGAGCTGCCTACAACCTACATAGGATGGCTCATGTGTCGCTTTGGTCTATCACTCATTTTTAGACTGCTGCTAAAAGCTGGGATTGACATAAACAGAACCACTAAATCCGGAACGGCTCTGCACGAGGCTGCCCTCTACGGGAAAACAGAAGTAGTAAAATTATTGCTCGATGCTGGGATTGATGTGAACATCCGCAACACCTACAATCAAACAGCCCTGGACATTGTGAACCAGTTCACCACTTCACATGCCAGCAAAGAAATCAAACAACTCCTTAGAGACGCCAGTGGAGCATTGCAGGTGAGAGCTTTAAAGGACTACTGGAATCTCCATGACCCCACTGCACTCAACATCCGGGCAGGAGATATAATCATGGTCCTCTCTGCCATGTGTGGAATGTCAACTGACTTAATTTACCGCATTGTTCGGCCAAATGAGGAAACGATCACAGACTTGACCATGAGGTTAGGAAAAAAGGTCTTAGAACAGCACATGGATGGACGTTGGAAAGGTCACATCCATGACAGTCAGAGAGGCACTGACCGTGTAGGATTCTTCCCGCCCTCCATCGTAGAGGTCATTAGCCGCAGATCAGGGGGCGTTCTCTCCCGGCAGGCCTCACTGCCCATCCAGAGACATCACATTCTGTCCCGTGCCCTGCCCTCACACAGTTCTCATCACACCTCTCACACTGACGACTCCTACACCTTATACTCATCCACCCGTCCTGTACTGACTCACCACAACGGGCTGGATCAGCACTCAGGTGTGCTTCCTGACAGTCCCAGTGCCTTGTGTAAGCCAGCTAGTCCCAAAGAACCAGAGGATATTTGGGTCCTCAGGACCTCTCTCAATGCAGGAGACAGGAACAGTGTGGGGAGCGCAGGCAGCATGGGCAGCAGTCGCAGTGCTGGCAGTGGACAGAGCACTGAGGGAAACTTTCCACACAATGGCCCCCATCAGTCACCTTCTGCTGTCCAGGACACCTCCAAGCTGCCTCCCTCTGCTGGAGAACTGGTGGAACAGTGCAGTCAGGCCCATGACCCTGCAAAACCGACGGACCCTCATTCAGGTCAGCACTGTCTTCAAGAGAATTTCAGTAGGAGGGAAGGACACAACAGAGGCAAAGTTGTGTGTAAGTCAGAAATACCAAGGAAAAGAGGAGAATTTGAGAGGGAGAGAAGATTATCAATGACACGGACACGAAAGTGTTTTTGTAGTGGCTTTGACTTGGAGGATCTAAAAATAAGCATGAGATCAAGAAACGCTCCTAAAATCAGCTTATCTTATGGAGGTGCTCTTGGACGGAGGATTCCACTGAGCAGCTCCAGACCTGGAGAACATGTCATCCATCCACAGCAACTTCTGGATGGCAAGGATGCTGAGGCTATTTACCAGTGGCTCTGTGAGTTTCAGCTTGAGCAGTACACATCGAATTTCCTCACTGCTGGTTATGATGTGCCCACAATCAGCAGAATGACCCCTGAGGATCTCACTGCTATTGGCGTTACAAAGCCTGGCCATCGCAAGAAGATCTCAATGGAGATCAGCAACTTGAATATCCCAGAGTGGTTGCCGGATTACATTCCATCTGATATTGGGAAATGGCTCAGTGCTATTGGGCTGCCACAGTACCAGAAAAAGCTAGCAGAGAATGGATATGACTCCATTAGCATAGTGCAGGATATCACGTGGGAGGATCTACAGGAAATTGGCATCATTAAGCTGGAAGGCTTCCTGTGGCCTCTGCCTCCTGAGACCCTGTAATTCATTTTTGTCCCCTATAAGGGACTCAAGATCTGAATTCATGGGAAGGAATAGCTTCTGGCCTGAAACCATGTTCTA

Function

symbol description
caskin2 Predicted to be located in cytoplasm. Predicted to be active in membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_02788126_02820510.mRNA True 2320 mRNA 0.50 20 2788126 2820588

Neighbor

gene id symbol gene type direction distance location
CI01000063_02757057_02761321 NA coding upstream 26612 2756792 ~ 2761514 (+)
CI01000063_02744075_02750377 ST6GALNAC1.1 coding upstream 37540 2744075 ~ 2750586 (+)
CI01000063_02697497_02705829 NA coding upstream 82261 2697376 ~ 2705865 (+)
CI01000063_02691683_02695421 STX4 coding upstream 92598 2691683 ~ 2695528 (+)
CI01000063_02683852_02690204 NA coding upstream 97611 2683441 ~ 2690515 (+)
CI01000063_03135170_03135337 NA coding downstream 314550 3135138 ~ 3135403 (+)
CI01000063_03213632_03233822 CAR10, CA10 coding downstream 393044 3213632 ~ 3234293 (+)
CI01000063_03307922_03312636 NA coding downstream 487334 3307922 ~ 3312807 (+)
CI01000063_03315604_03323945 NA coding downstream 495016 3315604 ~ 3323945 (+)
CI01000063_03333320_03353312 NA coding downstream 512732 3333320 ~ 3353585 (+)
G262413 NA non-coding upstream 68809 2718858 ~ 2719317 (+)
G262434 NA non-coding upstream 80927 2667066 ~ 2707199 (+)
G262728 NA non-coding upstream 154415 2633171 ~ 2633711 (+)
G262726 NA non-coding upstream 159160 2628069 ~ 2628966 (+)
G263552 NA non-coding downstream 6222 2826810 ~ 2827031 (+)
G263588 NA non-coding downstream 46934 2867522 ~ 2867784 (+)
G263611 NA non-coding downstream 67347 2887935 ~ 2888140 (+)
G263629 NA non-coding downstream 85278 2905866 ~ 2906180 (+)
G263673 NA non-coding downstream 123741 2944329 ~ 2958272 (+)
G262436 NA other upstream 73609 2713615 ~ 2714517 (+)
G262423 NA other upstream 545161 2241408 ~ 2242965 (+)
G262194 NA other upstream 1643119 1139352 ~ 1145007 (+)
G262060 NA other upstream 2077572 710110 ~ 710554 (+)
G261984 NA other upstream 2120744 665800 ~ 667382 (+)
G265391 NA other downstream 3093195 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 3514690 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004688 st6galnac1.2 coding NC_007123.7 CM002896.2 20691310 ~ 20785149 (+)