CI01000063_03333320_03353312


Basic Information

Item Value
gene id CI01000063_03333320_03353312
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3333320 ~ 3353585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_03333320_03353312.mRNA
ATGGACACAGATCCTCAGACTGGCCTCTATGTTGCCCTAAACTTCAGTCTCATCCCAGGAGCTGGTGAGAAAGCCTCTGGAATTGTATGGATCTATGTAGATGACCAACCAGTTCATTCAGTGTCTGAACAAACTCATTCCCAAGAACTCACCCTCTCTCTCTCAGCTGAGACTCGGTCACTGGAGCACACCATCTTCCTTACACCACTCTTGAATGGCTCTGCCAAAGACCTGTTTGTGAAGCTGAACAGTAGCGTCAGCGCTGTGGACATGTCCGTCTCAGTGTGTGTATTCAGCATGCTGTGCCGGTTCTTCAGTGTTGATGAGAGGCGCTGGAGCAGTGACGGCTTGAGTCCTCTGAGTGGCAGCAGACCCCACACTGCCCACTGCCTCACCCATCACCTCACTATGTTTGGAGCCAGCCTCTTTATCCATCCTGAGGCACTTCTACTATTGCCGCCTTCAGAGGAGCCGGTGAGAAACGTAGTGGTGGGAATAGTTTGTGGAGTCTTGCTGCTAATTCATCTGCTGGTTGGTCTTATCGCTCACAAAATGGATCACCTGGAAAGTCTGCGTCTGTGTTGGGTTCCTCTGTGTGGTCAGAAAGGTCGCTACCAGTACCGGGTTCTTGTCAAAACAGGCTGGAAAAGAGGGTCTGGTACCACTGCTCATGTTGGCATTAGCCTGTATGGTCTGAATAAAAGTGGCTCACGTCACCTTCAAAGAGAAGGAGCTTTCCAGAGGAACAGCCTGGATGACTTCCAAGTTGAAACGGATGCCAATCTTGGAGAGATCTGGAAAATACGCATCTGGCATGACAACACAGGTCTAGACCCATCCTGGTACTTACAACATGTGATAGTCTGGGACATACAGACAGATAACATGTTCTTCTTCCTGGTAGAAGACTGGCTATCTGTGGAGAATGAGAAGAACTCTGGAAGGGTGGAGAAAGTTATTTTGGCATCTTGTCCTCAGGAGCTGCAGCAGTTTAAGAGGATCCTACATTCCCAGTTACTTTTTGGCCTTCAAGAGCACCATCTGTGGATTTCGTTATGGGAACGACCGGCCCACAGCCGCTTTAGCCGAGCCCAGAGGGTAACCTGCTGCGCCCTCTTATTACATCTCTATCTGGCAGCTGGGGCAGTGTGGTATGGAGCAGTGGGCAGAAAGGGCAGCAGCGGTCCAGTCTCTACCCAGATGGTGATGAATGGGGAGACCATTTTGGTTGGAATGACAGTTGCTGCTTTGACCTTCCCCCTCCAAACCATTCTCAGATTTCTGTTCCAAAAAACCCAGAGCAAGGTGACATTGGAGGTATCTTTGCCTCCCTCTCCTGTGTCTCATTCTGTGGAGATGGATGTTTTCCTCAGTCACCCAGATCTCTCCTGCTCATCATTTCTGTCATTGCCAACAGGCCCTGACTCTTCCATATATGATGGACCTTCTCCTTTCACTAACTCACTGCAGAGCAAGAAACTAGATTCAGAGTTTTGGAATAGTCCCGATCCTGGGAATGACCGCCAGGACAGCTTGTGTAGTGAGTGGTCTGATCTGAGTGTGGATACGCCTACATATGAACCTGGCTTTCACAAGTCCTCCTCCTCACTCTCAGTGCTTAGTGAGGCCAGCACATTTCTCCCTAGCCTCCCACCTGACTCTATAAGCACCATCTCCAACACACGCATTGGTGTTGTTCGTGGTGTATCTGGCTTGCGTCTTCCATTGTGGGTTCTGCGTGTGGTTCACCTGCTGGTGGCTGTTCTGCTGGGAACATGCCTGGCTCTAGCAGGACTGTATGGGAGCATGTTTTCCAGCACTGTGGTTCTCATGTGGCTGGTGTCCGCCCTGTCAGCCTTCCTCACTTCTGCCTTGCTGTTGGAACCATTTGCAATATGTATTCAGGCACTGTATCTGGCTGCTGTTGTGAGACCAGTAGACCCAGAGGTAGAGGACCGTTTGGCTCAGGAGACAGAAGTCAGAAGGACAGTAGAGCATCTGGAGGATAAGGTTCATCCTCTCTGTGGATATGGCCTGCTGCAGGCTAAAGAGGAAGCACGGAAGCTGAGAACGCTTAGAGCCTTGATGAGGAGCTGCTTAGTCTACATGATCTTCCTGTTGGTGGTTCTGATGGTGAACTATCAGGAACATGTGCAGGAATCTAACAGCAGACTGCTTCAATCAGCTATAAAACACACACTGATTTCAGCTTCACCAGGGCAGCCCAGTCTCACTGCATTATCAGGGCCGACGACTAAGGGTGCATCATGTGCATTCAGTCAGACAAAGGAAGTAGTGCTTGGGAACAACAGTGAATCCACACGTCGGATCCTGTCAGACTTACAGACAACGAACTGGATGACAACAGGGACACAGGCAGTATTGATCGAGTTCACTCAGTATCATAAACAGACGGGCATCTTGGCACCAGTTTCTGTTCTCCTGGATCAAACACACACAGGCAGAATCCTTGCTTTCATCTCTATCCAGCCTTTTCACATCTCTCCATTATCCGGTCCAGACTTACACGTGACATTGACGATTCTGCTTTTGCTGTTTGCCCTGTGCTTTGTGAGTGTTGAAGTATGGGCCTTGATCAGGAAGCCAAATCAATACCTGAGGCAAGCCTGGTGCTGGTTTCAGCCATCGTTAGCTCTTCTGACGCTAGCAGCAGCTGTTCTTCGTCTGTATTTCCTCTACACGACTGCAGCCTGTGTTTCCAGACATCGCTCCCGGCCCACATCCTTTGCTGACTTTCACAGTGCTGCCACACTGGCCAGAAAATCCAATCAGCTCTCAGCAATCTTACTAACCCTCTTGGTTCTAAAGCTCTTCTCAGGTACAGTGGAGGGCTTTAGGACCTTATGGCAGGCCAGTTCCTCTCTGCTCTGTTTGTTAAGGGGGCACATGGGGTTACGTCGACTTTGTGAGCATCATCCCGTGGTGGGACCCCTCTACTGCCTGTCTGCCGTAGGCATTGGATTCTGGGTACTGGGGCGCCTTTGTGCTGCTGTATTGATTCGAACCTACCGAATGGTACAAGCAGACATTTACAGACCATCAATGGAGCCGCAGGACTATGAGATGGTACAGTTTCTCATTAAACGACTCAAGCTATGGATGGGGCTCAGCAAGACCAAAGAGTTTAGACACAGAGTCAAATTTGAGGGAATGGTTTTTCCACCCTCCAGATCCTCCCAAGGCTCTGAAGCCTCTAACTGCTCAGTCCCGCTCAGTCCCATTGGGCCCCGCCAGGCATCCTCTGCCTGCTCTTTGGCCTCCGATTCATCTGTCATTTCAGACAGTTTTGACTTTCACCATTATGTGGACCGCCTGGTGCCCTGTGTTGACAGTCTTCTGGCAGGTTTCGACCGCATCAACCAGCTGACCGAAGAAGTATATAACTTTGAGCTCCAACTTCAGCAAATACAGAGCAGAATCTCCCAGAGAAGAAAGCAGCCTCAGCAGGTGACCTTTGTGGGACGTGATCCAACACCTAAGCCACCACTGCTCCCTCGACATCCATCTACCTTTGTTTTGGAATGTAATCCCATTCCAGGTTCTCTCCAAAGTGTCATTAATACCCTTCCACGATGCCGCGCTACCCACTCAGAGTCCTCCCTGATGGGGTCTGCTGCTCAGTCAGGTAAGAGAATACTTTCTGCACTGGATGGAGGGATGAACAGTCTAAACCCTAGGAAAATGTGTGTCCCAAGACGCAGAGCCTGGAATTCAGTCACCTGCCATTCTGCTGACACCGCTCAGAGGTTGCCTGCACCTCACAGCACTGTGGCCTTGCCAGCGAGACCCCAGAGTGAAGACGGAGACCGTGAGCTTGTATGCAACAGCCTGCCGATTAAGAGACGGGCATGGCACACTGAATAAGTGTAGCAATTTTCATGCCATTATTATGTATTATATGTGGATAGTAATTTTGCTTCACTACTACTATTTACCTTCATTTTGATTTTTTGACACAGTGAATGCACAGTGTGTTAGTCACAATCGCTTTCAATTTTGTGAATTGTCTACCCCTTGACTGGTGCTTTTGCACTGCTTTTAATGTTAAAGTGTTTGCTTCCCTTTGGTTTCACCATGTTCAGTCCCTGTGGAACACAGATCTTGTTGTATATTTAAGAATCTCTTTTATTTTTGTCA

Function

NR:

description
Polycystin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_03333320_03353312.mRNA True 4158 mRNA 0.49 19 3333320 3353585

Neighbor

gene id symbol gene type direction distance location
CI01000063_03315604_03323945 NA coding upstream 9375 3315604 ~ 3323945 (+)
CI01000063_03307922_03312636 NA coding upstream 20513 3307922 ~ 3312807 (+)
CI01000063_03213632_03233822 CAR10, CA10 coding upstream 99027 3213632 ~ 3234293 (+)
CI01000063_03135170_03135337 NA coding upstream 197917 3135138 ~ 3135403 (+)
CI01000063_02788126_02820510 CASKIN2 coding upstream 512732 2788126 ~ 2820588 (+)
CI01000063_03369570_03370696 NA coding downstream 15623 3369026 ~ 3372142 (+)
CI01000063_03649864_03661903 WNT3 coding downstream 296279 3649864 ~ 3661939 (+)
CI01000063_03722032_03737642 HDLBP, HDLBPB coding downstream 366793 3720378 ~ 3737930 (+)
CI01000063_03808559_03820963 POLR2A coding downstream 454690 3808275 ~ 3821730 (+)
CI01000063_03832086_03844644 CAPGB coding downstream 478501 3832086 ~ 3844644 (+)
G263806 NA non-coding upstream 43475 3289508 ~ 3289845 (+)
G263805 NA non-coding upstream 43957 3288904 ~ 3289363 (+)
G263800 NA non-coding upstream 60708 3272190 ~ 3272612 (+)
G263771 NA non-coding upstream 145617 3185136 ~ 3187703 (+)
G263671 NA non-coding upstream 189144 3062341 ~ 3144176 (+)
G263819 NA non-coding downstream 2660 3356245 ~ 3356507 (+)
G263825 NA non-coding downstream 7606 3361191 ~ 3361417 (+)
G263827 NA non-coding downstream 8855 3362440 ~ 3368504 (+)
G263830 NA non-coding downstream 29269 3382854 ~ 3389886 (+)
G262436 NA other upstream 618803 2713615 ~ 2714517 (+)
G262423 NA other upstream 1090355 2241408 ~ 2242965 (+)
G262194 NA other upstream 2188313 1139352 ~ 1145007 (+)
G262060 NA other upstream 2622766 710110 ~ 710554 (+)
G261984 NA other upstream 2665938 665800 ~ 667382 (+)
G265391 NA other downstream 2560198 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2981693 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004693 pkd1b coding NC_007123.7 CM002896.2 21697540 ~ 21748008 (+)