CI01000063_03369570_03370696


Basic Information

Item Value
gene id CI01000063_03369570_03370696
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3369026 ~ 3372142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_03369570_03370696.mRNA
CTTTAAAACAGCCTGACAGTCAGTATCACTGCTAAATGATTCAAGAGGCGAGAGAATTTAAACCCAAAAACATTTCTTGGTTGACAAAAGAATATTAATGATGTTTCAATCACTAATGCAGATCTGCTTTGGTAAGTATGAATACAAAGTTCATTTTCATTTTGAAAGTATGAAATGGTGTTTTGCTTTCCAACAGGTAGTACCAATCCACCGAACCATGAGAGCATTCGACGCAAACACATACATAGAAACACAAATGCAGTCTCTCGACAGCGGATGACATCATTGGAGATCAGTGGAAAGTTGAACTAGCGCCCTCATATGTTCATGAGGTTTGACAAAGCAGGTCTCAGGCAGCAGTTATGGTCTTCCTAGACAAACCGAATGAGGCTCATGCAGTAGCGATGCACACGTCTCCCTTTCCAGCCTTTCAGCCACACCGCATCCCATCCACTCCCATTACGGCCCGTCGCATCAGCGCAGGTGACGGCATTCGCGGACATAGGCGAATGCGTGCAACTGGTGCAAATCTGAAACAGATGGGCTTTCGAGGCCGAAGGAGGGGGCCGTGTGCTTCCGCGATCACATGAACGCTCAAGCGCACATACACCCCATCGTACAGTTCAACACGTGCACTGGACGCACTTTGACACAAGTGCCACGCAGATAAGCTCTCCTCCCAAGTTCATTTAAGCTTTGTGTTGTGTGAGGTATGAGTAGATTGTGTTTCAGTTTTTTTTTTTTCAGTTTCTGTTGCATTATTTCTCATGTTTTTTTTTTCTAAGTCTTCTTTCTTAAAAAAAGAAAACAAAATATAAAAAGAAAATATTCCTGTTTCTTGTTGTAAATTCCTCTTGATAAAAAGACGAAGGACAGATACACAGACAAACAGAGCAGTCACTTATCATTACAAACTATAGTGAGGTGAAAAAAAGAGGTGAAATTCTCTAGTTTACACTGCACGCATGGTCAAAAAGTGACTACGGCTGTTGTTTTTCTCTCTTACATAAAGCAGTTAAGAATCGAAAACGAAAACACACATTTCAGTTCAAAACAAAAAGAAAGAAACGAACAGCTCAAGCTCCGAGATTTGAACTCTTTGTTCTGGAGTCATCTTTTTATTTGTTTTCTGGGTTTGTAATTCTTTTATAATATCTTTTTTTTCTTTTTCTTTCTTTCTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_03369570_03370696.mRNA False 1183 mRNA 0.40 2 3369208 3371289

Neighbor

gene id symbol gene type direction distance location
CI01000063_03333320_03353312 NA coding upstream 15623 3333320 ~ 3353585 (+)
CI01000063_03315604_03323945 NA coding upstream 45263 3315604 ~ 3323945 (+)
CI01000063_03307922_03312636 NA coding upstream 56401 3307922 ~ 3312807 (+)
CI01000063_03213632_03233822 CAR10, CA10 coding upstream 134915 3213632 ~ 3234293 (+)
CI01000063_03135170_03135337 NA coding upstream 233805 3135138 ~ 3135403 (+)
CI01000063_03649864_03661903 WNT3 coding downstream 278575 3649864 ~ 3661939 (+)
CI01000063_03722032_03737642 HDLBP, HDLBPB coding downstream 349089 3720378 ~ 3737930 (+)
CI01000063_03808559_03820963 POLR2A coding downstream 436986 3808275 ~ 3821730 (+)
CI01000063_03832086_03844644 CAPGB coding downstream 460797 3832086 ~ 3844644 (+)
CI01000063_03848184_03856699 NA coding downstream 475883 3847172 ~ 3856705 (+)
G263827 NA non-coding upstream 704 3362440 ~ 3368504 (+)
G263825 NA non-coding upstream 7791 3361191 ~ 3361417 (+)
G263819 NA non-coding upstream 12701 3356245 ~ 3356507 (+)
G263806 NA non-coding upstream 79363 3289508 ~ 3289845 (+)
G263805 NA non-coding upstream 79845 3288904 ~ 3289363 (+)
G263830 NA non-coding downstream 11565 3382854 ~ 3389886 (+)
G263843 NA non-coding downstream 26964 3398253 ~ 3398457 (+)
G263844 NA non-coding downstream 36208 3407497 ~ 3407712 (+)
G263845 NA non-coding downstream 36428 3407717 ~ 3408101 (+)
G263846 NA non-coding downstream 37148 3408437 ~ 3408649 (+)
G262436 NA other upstream 654691 2713615 ~ 2714517 (+)
G262423 NA other upstream 1126243 2241408 ~ 2242965 (+)
G262194 NA other upstream 2224201 1139352 ~ 1145007 (+)
G262060 NA other upstream 2658654 710110 ~ 710554 (+)
G261984 NA other upstream 2701826 665800 ~ 667382 (+)
G265391 NA other downstream 2542494 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2963989 6335618 ~ 6338283 (+)
G263800 NA non-coding upstream 95753 3272190 ~ 3272612 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G210578 thra,LOC101071184,LOC107093062,LOC100702192,LOC101467005 non-coding NC_053132.1 CM020929.1 7270186 ~ 7307796 (-)
bowfin (Amia calva) G15417 NA non-coding CM030122.1 CM030122.1 28964344 ~ 29039663 (+)