CI01000063_03848184_03856699


Basic Information

Item Value
gene id CI01000063_03848184_03856699
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3847172 ~ 3856705 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_03848184_03856699.mRNA
ATTTAAATACACATGTAGCCTGTTTGTTTATGATATCATTTTTTTATTTGTATGAGAACTATAAAGTTTGATCCGTGAACCCATTGGTTCATTTTTATATATATATTTTTTTTGCTTCATAAATCTGAACTTTGGATGGAGGAACTGAGGAGCTAAGAATGACATGGTTTATCACATGGTTTCAGAAAATGTTCACCTGCGTGAACTCTTCGCTGAATTATGCTGAGTGATTAGGGTGTAATATTTAGGTTGTGATAAGAAAGGGTTAGGATAAAGTCACAATTTAAGAATACGCCCCCTTTCAGTTAATGAATTTGAACTGAATTAGCGCCAATCCACAGAATGCTGAATTGTAATTGGAATGACAGAAAGAGGAATTTACTGAATTGCAATTCAAATTTAAGTGGTAAAAGTCACCCAACTGGCAATTTTATTAGTGCAGATTCAGGACAAACCACAAACAATGTACTTATTAATTCTGACTAATTATGTCCATTGCCCCATGATATCTAACATACACTTTTCAACCGATACTACATCTAGACATTTTTTAGTTCAATGCTGTCACATTAACACAGCCATCAAAACAGCAATACATTGTTCAGCCAACTTTTTATAACATAAATATTGACACCCAAAAAATTTTATTATGCCAAGCAATTTTAAACTCCCCCATGTTACATAAAATTCTAATTAATTTATTAAATATAATGAAATTTAAATGACTAATAAGTACAAATGTCTATTGGTGGCATGTCAGACATTAAACATTTCTGGATAAAAAGCATATGTTGTGTACAAGATTAATTGTGTTTATTGTTTTTTTTTTTTAACATTCTATGCAAATTAAAATACATATTACAATTCTGCATCTGGTTTGCTACCTAAATTAAAATTCAGAAATTTATTTGGAGAATTTTTTTTTAATCACACCTACTCATTTCTAGTCAACGTAAAAAATTCAACTGAACACAAGGAGAGGTTTAAAAGTTTATGAATTATAAGGTTGAAAATGTCCATTATTATTTCCAACTCTTTCAATCTCATCTTCATGAAGTTTTACTGTGTTAAACAGCATCTTACTGGAATAAAGTTCATGCCAACAGCTTCTTTTATTGGTTTTATTGAATTTCAGAAGTGCTTAAAATGCAGAGTAACTCAATTGGGGCCGTGCGCTGGACGCTACCAGAGGAATCTTCTCAGGTCCACAGTTCAGCGCCCACCAGCCCATTCAAGAGCAGTGGTGGATTTTCTACCCGTTCACAGCAAAGGCAACGTCAGCAGGGCCTGCAGGACCTCCGCAGCTTGGAAGAATGCATCAGATTCATCAACCACTGGAAGCAACAGGTGGCACAAGTTTGTAAGAGTACTACGTTTGATCCTTCAAAAGACAGACGTGTTTAACAGCCCAAGTAATAATTTCTTGGCAAACTCCTCTTTGCGTGCAAACTCAAAGGTGACCAATACGTTTTTATTATCCATGCTATCATATGATAAGCGTTGCCATAATGAGGATGATCCCGGTGAAGGGTGCAGCAGACCATCAGAGCAGCAGACAGACCGCAGAATTGAGCGCAGTATTGAAGAAAGCCGCAAGCTTATTCTGCAGTGGGCCAGTGAACTTCAAAGTGTAGACAAGCTGTCTAAAAAGCATTCTTGGCTGAAGGAGAGGATTGATCAGGAGGAGGAAGAGAACACAAAGCAGGATAAAGATCAGCATGAGGTGGTGCAGAAGAGGATCACGGAGTGGGCCAAAGAGATTCAGAGTGTGTCAGAGAGCTGTGGAATGCTGGGAGATGAGCTGGTACAGATGTTGCGTCTCCTGGGACTGAGGAAGAAGAGGCTGGTTTCCCTCATGCCACTGCTGGAGTTCATAACTTGGAGTTTCCTGAAGGAAGACAGCAAGGAACAGTTTGGCGACAGGGCATGGTTCCTCATCTGTGGCTTTCAGCTAAGCAGCGTACCTGGAAAGCTGGCATGCCACGCTACATCCCTAATTCAGTCTGGAGCTGGATTGTCAGTGCAGGAGCTCTCTGATGACCACAAGAAGGTTCAGGAGGGTCTAACAGAGGCTGATCTGTTATACAGCCCTCAGCGTTTTGATAGCTTGCCCTGCGTCCTAGGCTGGGAGGGCTACATGGGTGGTCGCCATTACTGGGAAGTGGAATTTGCAAACAATGGTTATTGGAAAGTTGGAGTGACAACTGCTACTTCAAAGAGGCATGGCCGCTTTCCAATGAAACCCTCTAATGGTTATTGGGTCCTATGGCGCAGCACACGACAGTTCTTCGCCTGCACCAATCCTGAAACGGCCCTGCCACTGCTGCTGGTGCCCCAGAAAATGGGAATATACATTGATTATGAGGAGGGACAGATTTCTTTCTACAACGCGGAGAACAAATCACACATCTTCACCTTCACAGGACAGTTTCGTGAGAAGCTGTACCCTTTCTTTGCCGTGATGGATGGCAGGTCCCTTATAACCTTTCTGAGTCAATCACTGTGCGACAAACTCTCGGCACAACTCCTCGATGCAGCGGGATCCACAGAGGAGGTGGGCAGGGCACCATCCTCTCTGCTTCTCAGTGATGATCTGCAAGATGTGTGCAAACGCGCTGCAGAAAAACTAAATATACCGTGGCCGACTGTGGTAGCGGAGACTGAAAAGTCACGCTACAAGGGTAATAGACTGCCGAGAGCAAAACAGGCAGCAAGACAGCTCCTTATTGTATTTCCAGAGCTCCTGGAGGAGGTGCAGTTACCTGGTAGGATAAACCGTTTGCCAGTTAGGTGCCCGTGCAGGGGGGGTCCGCTCTCAGAGGGGATGGAGAAGGAAGGCCTTCTCTGCATGCCCCCTATGAAGCTGTTAGTTGCTGCGCACTTGCACCCAAAGTGCACGGCCACTTCAATTCTGACATTGCCATGTAAAGTGAACCGATTCCAGTTGATGGAATGCACTTATAAAGCAATCGCTCTATCGGTCAGGGCTCTGAACACGATCTCTATGCTGACCGCATACCAAGCGGAGCTGCAGGACGAAGTGTCTACCATGCCAGGTCAGACACAGTGGGAAGAGATCTGTGTTGTTAAGGATCTCTCTCTCTGCGCCTTCAGAGATGCGCGGTCCAAGCTACAAGCAAGGCCATGGTCATAATGGTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_03848184_03856699.mRNA True 3160 mRNA 0.43 13 3847172 3856705

Neighbor

gene id symbol gene type direction distance location
CI01000063_03832086_03844644 CAPGB coding upstream 2528 3832086 ~ 3844644 (+)
CI01000063_03808559_03820963 POLR2A coding upstream 25442 3808275 ~ 3821730 (+)
CI01000063_03722032_03737642 HDLBP, HDLBPB coding upstream 109242 3720378 ~ 3737930 (+)
CI01000063_03649864_03661903 WNT3 coding upstream 185233 3649864 ~ 3661939 (+)
CI01000063_03369570_03370696 NA coding upstream 475883 3369026 ~ 3372142 (+)
CI01000063_03868669_03878824 MFSD8 coding downstream 10892 3867597 ~ 3879843 (+)
CI01000063_03886948_03891089 NA coding downstream 29982 3886687 ~ 3891819 (+)
CI01000063_03896845_03900770 CDCA9 coding downstream 40045 3896750 ~ 3901125 (+)
CI01000063_03920353_03956590 ABLIM2 coding downstream 63648 3920353 ~ 3956590 (+)
CI01000063_03991410_04022994 AFAP1 coding downstream 134596 3991301 ~ 4023699 (+)
G263941 NA non-coding upstream 39373 3805499 ~ 3807799 (+)
G263936 NA non-coding upstream 72684 3772468 ~ 3774488 (+)
G263945 NA non-coding upstream 231705 3609493 ~ 3615467 (+)
G263968 NA non-coding upstream 240223 3606620 ~ 3606949 (+)
G263967 NA non-coding upstream 241467 3605300 ~ 3605705 (+)
G263947 NA non-coding downstream 29 3856734 ~ 3857069 (+)
G264142 NA non-coding downstream 488729 4345434 ~ 4345721 (+)
G264162 NA non-coding downstream 538163 4394868 ~ 4400467 (+)
G264171 NA non-coding downstream 547167 4403872 ~ 4404343 (+)
G264172 NA non-coding downstream 549327 4406032 ~ 4406271 (+)
G262436 NA other upstream 1132655 2713615 ~ 2714517 (+)
G262423 NA other upstream 1604207 2241408 ~ 2242965 (+)
G262194 NA other upstream 2702165 1139352 ~ 1145007 (+)
G262060 NA other upstream 3136618 710110 ~ 710554 (+)
G261984 NA other upstream 3179790 665800 ~ 667382 (+)
G265391 NA other downstream 2057078 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2478573 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004699 capgb coding NC_007123.7 CM002896.2 22576404 ~ 22618080 (+)