G263941


Basic Information

Item Value
gene id G263941
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3805499 ~ 3807799 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU299597
AAAACATTTCAAACCATTCAGAGTTAAGTTTAGTGACATAATTGTGTCCAAATGACAAAAGTCTGGCGTCATAACATCAAATATGACACATTTAAAGGGACAGCTCACCTAAGAATGAATTCTGTCATTTACTCATCCTCATGTGATTTCAAGTACATGATTTACGTTGGGAATACAAAAAGAGATGCAAGGCAGAATTAATTTTATTGTATCATTTCATTCCTGTCAATCCCTAACATTTAGTTTAACATCTTCTGTGCTCCATAGAAAGCCATACAGGTCTAAAACAACAGGAGGGAGAGTAAATGACAAGTTTTATTTCTGAGGCTTATTAAGCTGTCAACTTTATGACTGTCAAACAAGGTTTCCCAGTGCGAATGCTGAAAAATATCTGTATGTAGAAAACAGCAGGGACTCCTCCATGTTGCACCGACATGAACGGCACACAAAAAGACCATTATTTTATGTGGGTTGAGATTAATATCTACACAGTACTTTTCCCCCCCAGAAACAACGATACTGCCTTCAACGTTATCACATTAGTTTTGTTTTTGTGGAAGACTGCTTTCACGGTGAACATAAAGCTAATGTTAGCTAGCTCAGGCTCGTTTCACTTCAATCTAGAGTTACGCAACTCCGCTTCCTTTCTGCCCTGTAAACCCGCCCAAGTACACAGGCAGCAGACTCCATGTTTGTTCATCGCACTGCCACTGTGCCCGCCATAAACGAGATGATCCCTCAAATAAATGTATATATCTATTTGGTATTATTTCTAAGCACGGGTCTGATTTAAATTAGGAGATCGATTCAGATCTTGACCCAACACTCGATATTCTCGTTCAAGAACAACGAGGTTTTGACTGTAAACGCATTGGGACCAAATCCGATTTAAAGCTCTTTGAAGAACCATTAATTTATATTTATCCAACACAAACCGACGGTTTAAGCAAATTTTCCCGATACACGTGGGATCGAATGAGTCGATCTGGACCTGATACATAAGCTCAGCACAATCTCGTGCTCTATTATCCGATTAGCTTTATTGAGATAAAATAATAAACGAACACTTTTCAGCTATAAAACACCTTTCTGTACTAAGCAATCGATGAGATTAAACTAATTAGAGAACCTATGTATTTCTTTTAATGTAGGTACATACGTAACCATCCAAGCTCGATGCTAAAAGGCTAACATAGATGTGATATAAGTAACACATGATCGGTTAAAAAGGAACATCTACGATCTGAAACCACACAAAGACAAGACCAAGAAAAACGAAAACAGCTTTTTTTTTGTTTAACCAAAATTGGTATAACGATCATAAATGCTGTGCATAACCGTCTCATGTATTTCTCGTGTCAATATTAACAGGTACCGGAGGCAAAAATACGTATGAAGTGTGATTTAACTATAAGAATTTCTAAAACGTCTTTGTGCTTTTAACTTCAAAATGTCTACACTGTAACCTTAATCCATTACTATTTAGCCGAGCAATGTTTCATATCTACCTTAATATAAACCTATATACTCATTTATACAAACATACACTGATATAAAAGGTATAGACTACCATATTAAAGAAAATGTGCCATGACTGTTGAAACGGGTAACGTTAGTGTTTAATTTTCCCATTCCACAAAGGATGGCGGCTAACAAGCTAGCAAAAGCTCACAACAGTCGCTAGGTAACATCAGGTTATATTACTACAGTTTCTCGAATATACTCTAAACTTGCGAGAATAAGGACTATATTAGATTATCAAATGAAATCATTTACGAACCATGGACTTGCGACTATTTATGAAAACTAGTAACAAGAAAACTTAAGCTAGCGCCTTTCCGTGAAACAACATGGCCTGGATGTACAATTCTATTTTTTATTTTACAGTGAACTGCTATAAACGTACAAATTCTCAAAATAGTTTCAAAAATATCAAATGTTAAAATCTACAACGTTTCTAGGATGTTTTTTCATTAAAAAATGTACTGTCCGAAGCCCCAGGCTTTCAGCGGCATTTCCAGCTGATCATACCCAGAAACGCTCATGTCGTCCAGCCATTGTTTTTACTCGACCTCGTGGATTCTTGTATTTTCCCGTAGAACACAAATAAATCAAGATAAATCGTAATAAATAATTCGAGAAATATTAATAAATGTACAAAATAAGACCAAGTTAATAATTTGAATTACATAAAAATCATATTCAAAACAAAAATAATGGTGTTAATCCTCGACGGTAGGTGTAGGCCTCTCGCACGAGCTTCTTTTCCAGCACTCTTAGCTGATCCAGAGCGAGACGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299597 True 2301 lncRNA 0.36 1 3805499 3807799

Neighbor

gene id symbol gene type direction distance location
CI01000063_03722032_03737642 HDLBP, HDLBPB coding upstream 67569 3720378 ~ 3737930 (+)
CI01000063_03649864_03661903 WNT3 coding upstream 143560 3649864 ~ 3661939 (+)
CI01000063_03369570_03370696 NA coding upstream 434210 3369026 ~ 3372142 (+)
CI01000063_03333320_03353312 NA coding upstream 451914 3333320 ~ 3353585 (+)
CI01000063_03315604_03323945 NA coding upstream 481554 3315604 ~ 3323945 (+)
CI01000063_03808559_03820963 POLR2A coding downstream 476 3808275 ~ 3821730 (+)
CI01000063_03832086_03844644 CAPGB coding downstream 24287 3832086 ~ 3844644 (+)
CI01000063_03848184_03856699 NA coding downstream 39373 3847172 ~ 3856705 (+)
CI01000063_03868669_03878824 MFSD8 coding downstream 59798 3867597 ~ 3879843 (+)
CI01000063_03886948_03891089 NA coding downstream 78888 3886687 ~ 3891819 (+)
G263936 NA non-coding upstream 31011 3772468 ~ 3774488 (+)
G263945 NA non-coding upstream 190032 3609493 ~ 3615467 (+)
G263968 NA non-coding upstream 198550 3606620 ~ 3606949 (+)
G263967 NA non-coding upstream 199794 3605300 ~ 3605705 (+)
G263965 NA non-coding upstream 203208 3601993 ~ 3602291 (+)
G263947 NA non-coding downstream 48935 3856734 ~ 3857069 (+)
G264142 NA non-coding downstream 537635 4345434 ~ 4345721 (+)
G264162 NA non-coding downstream 587069 4394868 ~ 4400467 (+)
G264171 NA non-coding downstream 596073 4403872 ~ 4404343 (+)
G264172 NA non-coding downstream 598233 4406032 ~ 4406271 (+)
G262436 NA other upstream 1090982 2713615 ~ 2714517 (+)
G262423 NA other upstream 1562534 2241408 ~ 2242965 (+)
G262194 NA other upstream 2660492 1139352 ~ 1145007 (+)
G262060 NA other upstream 3094945 710110 ~ 710554 (+)
G261984 NA other upstream 3138117 665800 ~ 667382 (+)
G265391 NA other downstream 2105984 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2527479 6335618 ~ 6338283 (+)

Expression


Co-expression Network