G263945


Basic Information

Item Value
gene id G263945
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3609493 ~ 3615467 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU299601
GTACTCTATTTCAGATGTTTGCATATAATGTCAGCATGTTAAAAAGCAGGACAAAAGACATTTCCTTTCAAATTCAGATTTATTTTTAATGACATTACACAAACAGATAATTAAAAGCATTTCAGTTGGACAGCTCATATTGTAACATCTACCACACTAAAAAGGGCCCATTGCACTGAATTTTACATATAGATTTCTCACATGTGTTTTACCCATATTTCGAATTATTCATTGCATTATGTTGTGTTTAAACTTAACAGATAATGTCCTGGAAAAAAAATTACAAGTATATTTTCCATTTTTCTAAGGATTTTTTTTTTTTTTTTTTTCTGTAACACTTTATTTCGGTAATCCACTTTAGACATTCTACTAACTATAAGTAACTTTGCAACTACATGTCAACTAACTCTCATTAGTGTATTAGTAGACTGCTAACACTTTATTTTGATGGTCCCACAACAGACATTCTACTGACTAATAAGGAACTTTCCAACTACTAAAAAGGCAGTTGTGGTCTAATGGTTAGAGAGTCAAACCGGTAACCCGAAGGTTGCGGGTTCAATTCTGAATACCTAACCCCCAATTACTCCCCGGGCGCCACAGCAAAAATGGCTGCTCACTGCTCCGAGTGTGTCCACGGCTGGCAGTTTGTGTGTGTTTACTACTCCTAATGTGTGTGTGTGTGTGTGTACTAACTTGGATGACAAATTCAGAGTATGGGTTACCATACTTGGTCTTCAGATGTCATTTTCACTTGTCAACTTATTCTATTAAACCGAATCCTAACACCAAACCTTAACCTTACAGTTTACTAATACTCTAATGAGAGTATTAATAATCTAATGAGAGTTAGTGGACATGTAGTTGCAACTCCATCTACCCTACCAAAAATGTTTTGGGTCAGTATGATGTATAATAGTTTCTACACAAATATTAAGCAGCACAACTGTTTTCAACTAATAATAAGAAATATTTCTTGAGCACCAAATCAGCATATCAGAATGATTTCTGAAGGATCGTGTGACTGAAGACTGCAGTAATGATGCTGAAAATTCAGCTTTGCCATCACAGGAATAAATTACATTTTAAAATATATTAAAATAGAAAACAGTTATTTTAAATTGTGATAATATTTCACAACATTACTGTTTTTTACTGTATTTTTGATCAAATAAATGCAGCCTGGCTGAGAATAAGAGCATTATAAATCAAAAACATTATAAATCTTACTGATCCCAAACTTTTCAATGGTAGTGTATGCCTACACTGCAAACAAAATTAATAATTTCTCTCTGTATATAAAAAAAATTCCCAAAAGTGTGCTCAATCTTCAGCCTGCTCCAGGCTATAATTTAAAGAACAGTCAGCTGTGTGTGCTGCATCAAGAAGACTTGGTCCTGTTGCCAATAGCCTTTTGTGCAAATATAAATATTGCTGTACAACCTTAAATGCTAGACCTTTCAGGATACTTTTATGTTTATGCAATAAACAGAAGTATGGCATACAATAATTAAAAATAAAACATACTGGGTGTCATAAAAAATTATGATAGTATAAAATACCAGGTAAAACACAGTGAAACGTGAGTGAAGGAGGAAAGAAACACCTCACGTTTGGAAGGTATCTGCTCACTGAGGGGAGAGACGTGTTGACAGGGAGATAGACCGCTTACACAGGCTGGAGCTAGTAATGGAGAACTGAGACTGACACATGAGGCCTCACTCTCGCCCATTCTGATGGACTCTCACCCAGTCAATGTTTAAAAAGTTGCTGGCTTTGGGTAACAGCCCAAAGAGCACGACCCTGGCTCATGTTGCACAGTGAAATCCTGGCGTGTTGCTTTCTTTATAGTGTTGCTGTCTGCAAAGTACTTTTTTTTTTATTTGTTAAACTAGAGGAAATCACCTTAGAAATGTCAGTTTCCTAATTTAATCTATGGTAAATCTTATCAACATGAAAGGGATAGTTCACCCAAAAATGAAAATTATCCCATGATGAGTTTGTTGCCCAACCATATTTGTTTAAACCATAAGAATTCAATGAATTCATTCATTACAGCACATTCACTGATGAATACGCTTCATCAGTCAAGCTTACGCTACTCCTACATCCTGCCATACATCGTGCAGTATGCGTACGGTCGTCTGGCGGAAGCTAGTTATTTTACTTAATATGGATGTATTTCTTACAAAAACCCATCGCTTCGCTTCAGAAGGCCTTTATTAACCCCCTGGAGCCGTATGGACTATTTTTATGATGGATGGATGCATTTATTTTGTGCTTCAAAACACACCCCTGTTCACTAACATTACAATGTTTAAGAGAACCAGGATATTTTTAAATATAACTCCAATTGTGTTCATCTGAAAGAAGACAGTCATATACACCTAGGATAGCTTGAGGGTAAAGAAAATCATGGGATCATTTTCATTTTTGGGTGAACTATCCCTTTAATGGGATAGTCTAGCCAAAAAATGAAAATTCTTTCACCATTTACTCACCCTCATGTCTTTCCACACCTGTATGACTTACTTTTTTTCTGTAGAACACAAATAATAGTTTGATTTTTTAATTTTATTTTGTCCGTACAATAAAAGTCAATGGGGTCTAATGTTGTTGGAACTTCATCAACTTTCATTGTATGGACAAAAAAAGTTGAAACCGTCTTCAAAATATCTTCTTTTGTTCCACATAAATAAGAAACTCAGCTTTGGAATGACATGAGGGTGAATAAATTAAGAAAAAAAATCTGTTTTTGAGTGATCTATCCATTCAAATGTCTTTCTGTTTTATTCATCTGGCACATTGTATAATGTCAGGTAGAGTTCATTCATTCATTACAGCACATTCACTGATGAATACGCCTCATCAGTCACAAGATTTTTTCTGCTGTTTAACTTTGCACAGCATCACGTCATGCAGTTAGTGTATTGCTGTGGGAGTTGTTTTGCTGCTGCTGTCACAATCATAATCACTGTGTGAAGGTAAACAGGAGAAACTGTTGGGTATATAGATGACAGAACAGTAATAAAACTGACAATTTGTCCGTGAGGCTCTGCTGCACCTAAAAAACATTGTACTTCACTATACAAGAAAGAAAGTCTCTGATATCACTCAGCATGAACCCTGACATCAGCATCCTGCCAGCTGATAAGGCCAGACGCACCACGGTACGCAACACCTCAAATTACCAAGCCACAACTTCACAAGAGTTCCTGTTCTTACAGTTCCCAAAACAGATAAAATAGCTTTGTAAATGTATTAATACAGTATGTAACAAAATCACATTTCAGGGAACATCACTTCAGCTACAAATGATGCACCCAGTCAGATGAGTCTCAAAACATCTGCAAATTAATAATGAGAACTGAAACCCAGTTGATGAACAAATTAACTCTAAATGACTTTCACATGAAATCATCCACCACAATGTTAATCTGCAATTGCATTAAGCAGTTAAACAAGATTGCAAAAGGTACCCTGTCAACAAATCAAGTATGAAGTAATCATCAACACTGCAGTAAGACCGTTTGCAAATGACTTTGCGTCTAAAACTGTGTGTAATGTGAGAAGGCAAATAATACAGTTTCTATCACTATAATATTAAGTATTATTGCAAATACTGATCACGAAACGTACAATAACACAGAATATGACTTACAAACAAGAGCAAACTATGATAAGAACAAATGTGGGATTCAAGGTCAACTGATTTGATAAGGTGTTGCTCCACGTACATAGGATTACTGTTTGCACAATTTTTCTGACAGTAATCCATACCATCGAAGATAGGCAGCAATAAAACAAACATAGAGATCATGACTGAGACACCATTATAACAAACTGCTACTAAACATGACAATGAAATGCTGTATGAGACTTTAAACGCAAACAATGTCATTTTCAAAGCAACCTTTTCAAAATCTTGCACAGTACTAGGAATACATCTGTGTGGTTAGTCACAGACCATACATCATTCCAATATAACTTCTTGTTATTAAAAAAAAAAAAAAAAAAAAAGATAATTATGAGTTAATTATGAGAAAATTATGTTATGCGAAATGCATATCAGTCCACCAGTCTATACTCTTGTTCGCAAAACGCAGTACGTAGTTTGCCAAATTTAAAATCTAGTCTTTTAGACCATTATCTGTATTATGACAGACGGATTTGCACTTGGGTTTGCTTAAATTGCTAATCAAATCAATAAAAATGCAATAAAAGCAAATTTTCTGTTTCAGTGTTGCCACAGTTACTGCGTTTTGCCTCTGTGAGAGAGCATAATGATAACATGGTAAAAGAGAACATGGTGATTGGCCATCAACATTGATAAGCACTTCAACATCTTATTTACATTTTGTTGATGCTTCACAGAAATGTTCTGTACCTTAGCAAACTGCATTAACATTTAGCCTAAGTTATCCTGACTCACACTGGGACGTGAAGTGCAGGAGCTGTACATACAAGTCCAACAAGACAGATTACAATCCAAAGGTCATTTGCACAGCCAGACTAAAGTTTCTCTCTTGGCGAAAAAAGGATCCAATCCAATATTCCCTGTATCTGTGCTCTCCATCTAGAGGGTTTTAATTCCCATGCAATTCCAGCTAACTCATTTTATTACTCAATATTAAGTGCGTGTTATAAAAGAGTGAAAGGTTTTAGGGCTCTGGTTAAACACTGGATATGTATCACTGCAACCGACGTATGCACAATCATCATATATAAAATTCAACTAGTTTTGTTTTAAATCTATAAACGTGTTTTAAGTTTTGAAATAAAGGGCTGGCAACAGTTTTATCAGGACAGGGTGACAATGTTCAACCATGGGATTGAAGCCAGTCTTTTGCACCTGGGCTAAAAATAGCCTTTCTTCAGAAACACAGTACCTTTCTTCTTTTTCCTCAGCGCTGAATACTGGGAAATGCTCACTCAGGCTCCCAAAACAGTTAAGAAGACATGATGAACCAGATCATTTTGACCCATCAGATTCATTGCATCAACGCAGCTTTTCTGCCAAAGTGACTGAAAGCTAACATGTGGGTCCACATGACATACACAGTGCTGTTAAGCAACAAAGTAGAACGGAGGTCCTAACATCTCCAGAGACCCTCATCTGCTGCATTCTGCTGGTGGTTCAACAAATGCGTTTGTATCTAACAAATGTTATACAAAAAAACATCAATAAAAGTGATGTTGTAGCAAACAATTCGACCAGTTCGACCGCAAAGCAGAAGAGCATCTGGAGAAGCCCTCAATTTTCCCCTTTTTTATTTCCACAGAGTAAGTCAATGAGCACCCTGTGTGTCAACCTCGTGTTGAAGAACAAAACCTCAGTACTTATTAATTCCGAAGAGACGGACCCCGTGGAACTGAGGAAGTTTGGGGATAAGCACGGTGAGCAGGGAAATGGTGTTGATGATGAAGTGGACCCTGTCATACTTTGTATAGAAACTGGTCAGGAAATACCTGTAGAGGGGAAGGACAAGGACAAGATCAAGTCAGATGTCAAATAGCAACATGAGATGCACAGATGCAGAGGCTACAGCAGTTGCTCAAGCAAGCACAGCACAACCCTGCATCTAATGGGAACACAGGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299601 True 5601 lncRNA 0.37 2 3609493 3615467

Neighbor

gene id symbol gene type direction distance location
CI01000063_03369570_03370696 NA coding upstream 238204 3369026 ~ 3372142 (+)
CI01000063_03333320_03353312 NA coding upstream 255908 3333320 ~ 3353585 (+)
CI01000063_03315604_03323945 NA coding upstream 285548 3315604 ~ 3323945 (+)
CI01000063_03307922_03312636 NA coding upstream 296686 3307922 ~ 3312807 (+)
CI01000063_03213632_03233822 CAR10, CA10 coding upstream 375200 3213632 ~ 3234293 (+)
CI01000063_03649864_03661903 WNT3 coding downstream 34397 3649864 ~ 3661939 (+)
CI01000063_03722032_03737642 HDLBP, HDLBPB coding downstream 104911 3720378 ~ 3737930 (+)
CI01000063_03808559_03820963 POLR2A coding downstream 192808 3808275 ~ 3821730 (+)
CI01000063_03832086_03844644 CAPGB coding downstream 216619 3832086 ~ 3844644 (+)
CI01000063_03848184_03856699 NA coding downstream 231705 3847172 ~ 3856705 (+)
G263968 NA non-coding upstream 2544 3606620 ~ 3606949 (+)
G263967 NA non-coding upstream 3788 3605300 ~ 3605705 (+)
G263965 NA non-coding upstream 7202 3601993 ~ 3602291 (+)
G263964 NA non-coding upstream 7938 3601261 ~ 3601555 (+)
G263963 NA non-coding upstream 11157 3598097 ~ 3598336 (+)
G263936 NA non-coding downstream 157001 3772468 ~ 3774488 (+)
G263941 NA non-coding downstream 190032 3805499 ~ 3807799 (+)
G263947 NA non-coding downstream 241267 3856734 ~ 3857069 (+)
G264142 NA non-coding downstream 729967 4345434 ~ 4345721 (+)
G264162 NA non-coding downstream 779401 4394868 ~ 4400467 (+)
G262436 NA other upstream 894976 2713615 ~ 2714517 (+)
G262423 NA other upstream 1366528 2241408 ~ 2242965 (+)
G262194 NA other upstream 2464486 1139352 ~ 1145007 (+)
G262060 NA other upstream 2898939 710110 ~ 710554 (+)
G261984 NA other upstream 2942111 665800 ~ 667382 (+)
G265391 NA other downstream 2298316 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 2719811 6335618 ~ 6338283 (+)

Expression


Co-expression Network