RNA id: CI01000063_03333320_03353312.mRNA


Basic Information

Item Value
RNA id CI01000063_03333320_03353312.mRNA
length 4158
RNA type mRNA
GC content 0.49
exon number 19
gene id CI01000063_03333320_03353312
representative True

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 3333320 ~ 3353585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGACACAGATCCTCAGACTGGCCTCTATGTTGCCCTAAACTTCAGTCTCATCCCAGGAGCTGGTGAGAAAGCCTCTGGAATTGTATGGATCTATGTAGATGACCAACCAGTTCATTCAGTGTCTGAACAAACTCATTCCCAAGAACTCACCCTCTCTCTCTCAGCTGAGACTCGGTCACTGGAGCACACCATCTTCCTTACACCACTCTTGAATGGCTCTGCCAAAGACCTGTTTGTGAAGCTGAACAGTAGCGTCAGCGCTGTGGACATGTCCGTCTCAGTGTGTGTATTCAGCATGCTGTGCCGGTTCTTCAGTGTTGATGAGAGGCGCTGGAGCAGTGACGGCTTGAGTCCTCTGAGTGGCAGCAGACCCCACACTGCCCACTGCCTCACCCATCACCTCACTATGTTTGGAGCCAGCCTCTTTATCCATCCTGAGGCACTTCTACTATTGCCGCCTTCAGAGGAGCCGGTGAGAAACGTAGTGGTGGGAATAGTTTGTGGAGTCTTGCTGCTAATTCATCTGCTGGTTGGTCTTATCGCTCACAAAATGGATCACCTGGAAAGTCTGCGTCTGTGTTGGGTTCCTCTGTGTGGTCAGAAAGGTCGCTACCAGTACCGGGTTCTTGTCAAAACAGGCTGGAAAAGAGGGTCTGGTACCACTGCTCATGTTGGCATTAGCCTGTATGGTCTGAATAAAAGTGGCTCACGTCACCTTCAAAGAGAAGGAGCTTTCCAGAGGAACAGCCTGGATGACTTCCAAGTTGAAACGGATGCCAATCTTGGAGAGATCTGGAAAATACGCATCTGGCATGACAACACAGGTCTAGACCCATCCTGGTACTTACAACATGTGATAGTCTGGGACATACAGACAGATAACATGTTCTTCTTCCTGGTAGAAGACTGGCTATCTGTGGAGAATGAGAAGAACTCTGGAAGGGTGGAGAAAGTTATTTTGGCATCTTGTCCTCAGGAGCTGCAGCAGTTTAAGAGGATCCTACATTCCCAGTTACTTTTTGGCCTTCAAGAGCACCATCTGTGGATTTCGTTATGGGAACGACCGGCCCACAGCCGCTTTAGCCGAGCCCAGAGGGTAACCTGCTGCGCCCTCTTATTACATCTCTATCTGGCAGCTGGGGCAGTGTGGTATGGAGCAGTGGGCAGAAAGGGCAGCAGCGGTCCAGTCTCTACCCAGATGGTGATGAATGGGGAGACCATTTTGGTTGGAATGACAGTTGCTGCTTTGACCTTCCCCCTCCAAACCATTCTCAGATTTCTGTTCCAAAAAACCCAGAGCAAGGTGACATTGGAGGTATCTTTGCCTCCCTCTCCTGTGTCTCATTCTGTGGAGATGGATGTTTTCCTCAGTCACCCAGATCTCTCCTGCTCATCATTTCTGTCATTGCCAACAGGCCCTGACTCTTCCATATATGATGGACCTTCTCCTTTCACTAACTCACTGCAGAGCAAGAAACTAGATTCAGAGTTTTGGAATAGTCCCGATCCTGGGAATGACCGCCAGGACAGCTTGTGTAGTGAGTGGTCTGATCTGAGTGTGGATACGCCTACATATGAACCTGGCTTTCACAAGTCCTCCTCCTCACTCTCAGTGCTTAGTGAGGCCAGCACATTTCTCCCTAGCCTCCCACCTGACTCTATAAGCACCATCTCCAACACACGCATTGGTGTTGTTCGTGGTGTATCTGGCTTGCGTCTTCCATTGTGGGTTCTGCGTGTGGTTCACCTGCTGGTGGCTGTTCTGCTGGGAACATGCCTGGCTCTAGCAGGACTGTATGGGAGCATGTTTTCCAGCACTGTGGTTCTCATGTGGCTGGTGTCCGCCCTGTCAGCCTTCCTCACTTCTGCCTTGCTGTTGGAACCATTTGCAATATGTATTCAGGCACTGTATCTGGCTGCTGTTGTGAGACCAGTAGACCCAGAGGTAGAGGACCGTTTGGCTCAGGAGACAGAAGTCAGAAGGACAGTAGAGCATCTGGAGGATAAGGTTCATCCTCTCTGTGGATATGGCCTGCTGCAGGCTAAAGAGGAAGCACGGAAGCTGAGAACGCTTAGAGCCTTGATGAGGAGCTGCTTAGTCTACATGATCTTCCTGTTGGTGGTTCTGATGGTGAACTATCAGGAACATGTGCAGGAATCTAACAGCAGACTGCTTCAATCAGCTATAAAACACACACTGATTTCAGCTTCACCAGGGCAGCCCAGTCTCACTGCATTATCAGGGCCGACGACTAAGGGTGCATCATGTGCATTCAGTCAGACAAAGGAAGTAGTGCTTGGGAACAACAGTGAATCCACACGTCGGATCCTGTCAGACTTACAGACAACGAACTGGATGACAACAGGGACACAGGCAGTATTGATCGAGTTCACTCAGTATCATAAACAGACGGGCATCTTGGCACCAGTTTCTGTTCTCCTGGATCAAACACACACAGGCAGAATCCTTGCTTTCATCTCTATCCAGCCTTTTCACATCTCTCCATTATCCGGTCCAGACTTACACGTGACATTGACGATTCTGCTTTTGCTGTTTGCCCTGTGCTTTGTGAGTGTTGAAGTATGGGCCTTGATCAGGAAGCCAAATCAATACCTGAGGCAAGCCTGGTGCTGGTTTCAGCCATCGTTAGCTCTTCTGACGCTAGCAGCAGCTGTTCTTCGTCTGTATTTCCTCTACACGACTGCAGCCTGTGTTTCCAGACATCGCTCCCGGCCCACATCCTTTGCTGACTTTCACAGTGCTGCCACACTGGCCAGAAAATCCAATCAGCTCTCAGCAATCTTACTAACCCTCTTGGTTCTAAAGCTCTTCTCAGGTACAGTGGAGGGCTTTAGGACCTTATGGCAGGCCAGTTCCTCTCTGCTCTGTTTGTTAAGGGGGCACATGGGGTTACGTCGACTTTGTGAGCATCATCCCGTGGTGGGACCCCTCTACTGCCTGTCTGCCGTAGGCATTGGATTCTGGGTACTGGGGCGCCTTTGTGCTGCTGTATTGATTCGAACCTACCGAATGGTACAAGCAGACATTTACAGACCATCAATGGAGCCGCAGGACTATGAGATGGTACAGTTTCTCATTAAACGACTCAAGCTATGGATGGGGCTCAGCAAGACCAAAGAGTTTAGACACAGAGTCAAATTTGAGGGAATGGTTTTTCCACCCTCCAGATCCTCCCAAGGCTCTGAAGCCTCTAACTGCTCAGTCCCGCTCAGTCCCATTGGGCCCCGCCAGGCATCCTCTGCCTGCTCTTTGGCCTCCGATTCATCTGTCATTTCAGACAGTTTTGACTTTCACCATTATGTGGACCGCCTGGTGCCCTGTGTTGACAGTCTTCTGGCAGGTTTCGACCGCATCAACCAGCTGACCGAAGAAGTATATAACTTTGAGCTCCAACTTCAGCAAATACAGAGCAGAATCTCCCAGAGAAGAAAGCAGCCTCAGCAGGTGACCTTTGTGGGACGTGATCCAACACCTAAGCCACCACTGCTCCCTCGACATCCATCTACCTTTGTTTTGGAATGTAATCCCATTCCAGGTTCTCTCCAAAGTGTCATTAATACCCTTCCACGATGCCGCGCTACCCACTCAGAGTCCTCCCTGATGGGGTCTGCTGCTCAGTCAGGTAAGAGAATACTTTCTGCACTGGATGGAGGGATGAACAGTCTAAACCCTAGGAAAATGTGTGTCCCAAGACGCAGAGCCTGGAATTCAGTCACCTGCCATTCTGCTGACACCGCTCAGAGGTTGCCTGCACCTCACAGCACTGTGGCCTTGCCAGCGAGACCCCAGAGTGAAGACGGAGACCGTGAGCTTGTATGCAACAGCCTGCCGATTAAGAGACGGGCATGGCACACTGAATAAGTGTAGCAATTTTCATGCCATTATTATGTATTATATGTGGATAGTAATTTTGCTTCACTACTACTATTTACCTTCATTTTGATTTTTTGACACAGTGAATGCACAGTGTGTTAGTCACAATCGCTTTCAATTTTGTGAATTGTCTACCCCTTGACTGGTGCTTTTGCACTGCTTTTAATGTTAAAGTGTTTGCTTCCCTTTGGTTTCACCATGTTCAGTCCCTGTGGAACACAGATCTTGTTGTATATTTAAGAATCTCTTTTATTTTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299428 lncRNA upstream 43475 3289508 ~ 3289845 (+) True G263806
TU299427 lncRNA upstream 43957 3288904 ~ 3289363 (+) True G263805
TU299422 lncRNA upstream 60708 3272190 ~ 3272612 (+) True G263800
TU299392 lncRNA upstream 145617 3185136 ~ 3187703 (+) True G263771
TU299290 lncRNA upstream 189144 3062341 ~ 3144176 (+) True G263671
TU299441 lncRNA downstream 2660 3356245 ~ 3356507 (+) True G263819
TU299449 lncRNA downstream 7606 3361191 ~ 3361417 (+) True G263825
TU299464 lncRNA downstream 8855 3362440 ~ 3368472 (+) False G263827
TU299474 lncRNA downstream 13293 3366878 ~ 3368472 (+) False G263827
TU299468 lncRNA downstream 13743 3367328 ~ 3368472 (+) False G263827
CI01000063_03315604_03323945.mRNA mRNA upstream 9375 3315604 ~ 3323945 (+) True CI01000063_03315604_03323945
CI01000063_03307922_03312636.mRNA mRNA upstream 20513 3307922 ~ 3312807 (+) True CI01000063_03307922_03312636
CI01000063_03213632_03233822.mRNA mRNA upstream 99027 3213632 ~ 3234293 (+) True CI01000063_03213632_03233822
CI01000063_03135170_03135337.mRNA mRNA upstream 197917 3135138 ~ 3135403 (+) True CI01000063_03135170_03135337
CI01000063_02788126_02820510.mRNA mRNA upstream 512732 2788126 ~ 2820588 (+) True CI01000063_02788126_02820510
CI01000063_03369570_03370696.mRNA mRNA downstream 15623 3369208 ~ 3371289 (+) False CI01000063_03369570_03370696
CI01000063_03649864_03661903.mRNA mRNA downstream 296279 3649864 ~ 3661939 (+) True CI01000063_03649864_03661903
CI01000063_03722032_03737642.mRNA mRNA downstream 366793 3720378 ~ 3737930 (+) True CI01000063_03722032_03737642
CI01000063_03808559_03820963.mRNA mRNA downstream 454690 3808275 ~ 3821730 (+) True CI01000063_03808559_03820963
CI01000063_03832086_03844644.mRNA mRNA downstream 478501 3832086 ~ 3844644 (+) True CI01000063_03832086_03844644
TU297890 other upstream 618803 2713615 ~ 2714517 (+) True G262436
TU297877 other upstream 1090355 2241408 ~ 2242965 (+) True G262423
TU297621 other upstream 2188313 1143871 ~ 1145007 (+) True G262194
TU297466 other upstream 2622766 710173 ~ 710554 (+) True G262060
TU297382 other upstream 2665938 665800 ~ 667382 (+) True G261984
TU301223 other downstream 2560198 5913783 ~ 5919029 (+) True G265391
TU301297 other downstream 2981693 6335278 ~ 6335601 (+) True G265462

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009298 True 11674 mRNA 0.46 38 NC_007123.7 21697540 ~ 21748008 (+)