CI01000063_05490285_05556254 (PRKCEA, PRKCE, PRKCEB)


Basic Information

Item Value
gene id CI01000063_05490285_05556254
gene name PRKCEA, PRKCE, PRKCEB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5490285 ~ 5556462 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05490285_05556254.mRNA
ATGACCCCGACCCTTAAAAAATTCTGGCTGCGAAAATGGCACAAGCCAGCTGCATCTCACTTGAGCGTCATCATGGTGGTTTTTAATGGAGTGTTGAAGATCAAAGTTTGCGAGGCGCTGGACCTGAAGCCCACTCCATGGTCGCTCCGGCATGCTGTTGGACCGAAGACCCAGACCTTCCTGCTGGACACGTACATTGCCCTCAACGTGGACGATTCACGTGTGGGCCAAACTTCTACCAAGCAAAAGACAAATAGTCCAGCTTGGAATGATGAGTTTGTAACAGAGGTTTATGATGGGAAGAAAATTGAACTGTCCGTCTTTCACGACGCACCAATTGGCTATGATGACTTTGTGGCCAACTGCACTATACAGTTTGAGGACCTGCTGCAGAATGGCAGTAGGCACTTTGAAGATTGGATGGACGTAGGAGGACTGTTGCTGAGCTCAAACTGTCTTAGAGAGAGGCTCCTCTTCCCCCACGCGGAGTTGATGGCGAGTGGGCGTCGAATCTCGGCTAGGCGTCGGGCCCATGTGGGGTCTGCGTGGGTCGCTCGGGGATGTGCTGCACTGGCAGGAAATTGTTTGAAAAGGAATTATAAAACCGAAGCAGTTTCCCTGCCAACTCTCTGCCACCCTCCATCCTTAGAGACAACAAAAAGAGGCAGAGAGCAGGAAGTTAGTGAGCGCGTGTGTGAGGGGCCCATCCCTGTAGAGGGAGATTCACAGAGGGAATCTATTACTGGGATCATCGACTTGGAGCCTGAGGGCAAAGTGTACGTCATCATCGATCTGTCTGGATCCTCCAGTGAAGGAATGCTGTCCCCCTCAAAGGCATCACCTGACTGCTGGAATGCATGGAGCCGTGGCGCTGCATCATCCAATGAAAATGAGGAGAGAGTGTTCCGTGAGCGGATGCGTCCACGGAAACGGCAGGGGGCGGTTCGGAGGCGTGTCCATCAGGTTAATGGACACAAGTTCATGGCCACCTACCTGAGACAGCCCACCTACTGCTCCCACTGCCGAGATTTCATCTGGGGTGTGTTGGGGAAACAGGGGTATCAGTGTCAGGTGTGTACCTGCGTGGTCCATAAGAGATGCCATGAGCTCATTATAACAAAATGTGCTGGCTTGAAGAAACAGGAAGACACTCCTGAAGAGGTTGGCTCCCAGCGCTTCAGTGTAAACATTCCACACATGTTCAGCATTCACAATTACAAAGTCCCCACCTTCTGCGACCACTGCGGCTCCTTACTTTGGGGACTGATGCGGCAAGGCCTGCAGTGCAAAGGCAAGCGTTCCTGTAAAATGAATGTCCATCGGCGTTGTGAAAGTAATGTAGCTCCTAGCTGTGGTGTCGATGCCAGAAAAATTGCTAAAGTGCTTTCTGATCTCGGGGTGACACCAGACAAAATCTCCAACAGTACCCAACGCAGGAAAAAGTTGACTCCAGGGCAGGACCCTCAGCAAACCACAACAGAAGCCCCCTCATCAGAGGAGTCTGACCGATGCAAATCAGCTCCAGCTTCACCCTGCGACCAGGAGCTTGCAGAACTGGAGAGTATCCGCAAGGCCCTGTCATTTGGCCAGGAGCACAAGTCTTCCTCCTCTTCCTCGTGCAGCGCCGTTCAGAGCACAGCGACCGAGGGCCGGGAGAATGGAGATCTCAAGACCGTACAGACGAAGAGGATGAGTCTCACGGACTTCTTGTTCATCAAAGTGCTGGGCAAAGGCAGCTTCGGCAAAGTGATGCTGGCTGAGCTGAAAGGCACAGATGAAGTTTACGCTGTGAAAGTTCTGAAAAAAGACGTCATCCTTCAAGATGATGATGTGGACTGCACTTTGACAGAGAAACGCATTCTGGCCCTGGCTAGAAAACATCCCTATCTGACTCAGCTTTTCTGCTGCTTCCAGACGAAGGATCGGTTGTTCTTTGTTATGGAGTATGTGAACGGAGGAGACCTGATGTTTCAGATCCAGCGCTCACGAAAGTTTGATGAAGCCCGTTCCCGTTTCTACGCAGCTGAGGTCACATCAGCACTTATGTTCCTGCACCAACACGGCGTCATCTACAGAGATCTGAAGCTGGATAACATTCTTTTGGACGCTGAAGGCCACTGTAAACTGGCTGACTTTGGCATGTGCAAAGAGGGCATTCTGAACGGGGTCACGACCACTACCTTCTGCGGGACACCTGACTACATCGCACCTGAGATCCTGCAGGAGTTGGAGTACGGCCCATCGGTGGATTGGTGGGCTCTGGGTGTGCTCATGTACGAAATGATGGCCGGTCAGCCTCCGTTTGAAGCTGACAATGAGGACGACCTTTTTGAGTCCATCCTCCACGATGACGTGCTTTACCCCGTGTGGCTCAGTAAAGAAGCCGTCAGCATTCTGAAATCTTTCATGACAAAGAACCCCAGTAAGCGTCTGGGCTGTGTGGTGACCCAGGGGCTGGAGGAAGCCATCAAAGTCCATCCTTTCTTCAGAGAGATCGACTGGGTCCTGCTGGAGCAGAGGAGGGTCAAGCCCCCCTTTAAACCTCGCATTAAAACCAAGCGCGATGTGAATAACTTCGACCAGGACTTCACTCGCGAGGACCCCGTGCTCACGCCAGTAGACGAGGCAATCATCAAGCAAATCAACCAGGATGAATTCAAGGGCTTCTCATACTTCGGAGAGGAAGCTTTGTCTTAAAGCCCAACCCTTCATCTGTCAGCTCAAATATATGCTAAACACACCCACAAACACTCAAAAATCCACATCGCATCGCAATACATGAACACACACTCCACAGATGCGCTGAAGATGGGGCTCAAACCAGACGAGAGCAGAACGGCCAGTCCCTGTGGTTCACTTCCCCTTTACTGCTGTTTTTGCTCTTTTATTCTTCTCTATGTCTCCA

Function

symbol description
prkcea Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Is expressed in brain; peripheral neurons; and spinal cord. Orthologous to human PRKCE (protein kinase C epsilon).
prkceb Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within glomerular filtration and glomerular visceral epithelial cell development. Predicted to be located in cytoplasm. Orthologous to human PRKCE (protein kinase C epsilon).
prkce Enables enzyme activator activity; enzyme binding activity; and protein kinase C activity. Involved in several processes, including peptidyl-serine phosphorylation; positive regulation of cellular glucuronidation; and positive regulation of epithelial cell migration. Located in several cellular components, including cytosol; endoplasmic reticulum; and intermediate filament cytoskeleton.

GO:

id name namespace
GO:0071380 cellular response to prostaglandin E stimulus biological_process

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05490285_05556254.mRNA True 2905 mRNA 0.52 19 5490285 5556462

Neighbor

gene id symbol gene type direction distance location
CI01000063_05466326_05468126 SIX3, SIX3A, SIX3B, SIX3.L coding upstream 21003 5466052 ~ 5469282 (+)
CI01000063_05400578_05406105 PPM1BB, PPM1B coding upstream 84008 5400578 ~ 5406277 (+)
CI01000063_05281800_05302429 NA coding upstream 187786 5280655 ~ 5302499 (+)
CI01000063_05271158_05276999 NA coding upstream 213180 5271158 ~ 5277105 (+)
CI01000063_05223875_05227171 NA coding upstream 263114 5223875 ~ 5227171 (+)
CI01000063_05563124_05584474 NA coding downstream 6662 5563124 ~ 5585104 (+)
CI01000063_05597755_05613489 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding downstream 40862 5597324 ~ 5614654 (+)
CI01000063_05639341_05650366 NA coding downstream 82828 5639290 ~ 5650682 (+)
CI01000063_05673923_05678546 NA coding downstream 117367 5673829 ~ 5678725 (+)
CI01000063_05894405_05894580 NA coding downstream 337943 5894405 ~ 5894677 (+)
G265173 NA non-coding upstream 54645 5435399 ~ 5435640 (+)
G265142 NA non-coding upstream 107361 5382707 ~ 5382924 (+)
G265141 NA non-coding upstream 107806 5382191 ~ 5382479 (+)
G265094 NA non-coding upstream 123019 5360934 ~ 5367266 (+)
G265133 NA non-coding upstream 139372 5350506 ~ 5350913 (+)
G265156 NA non-coding downstream 112440 5668902 ~ 5689574 (+)
G265153 NA non-coding downstream 133754 5690216 ~ 5712916 (+)
G265246 NA non-coding downstream 148631 5705093 ~ 5706882 (+)
G265252 NA non-coding downstream 161158 5717620 ~ 5717948 (+)
G262436 NA other upstream 2775768 2713615 ~ 2714517 (+)
G262423 NA other upstream 3247320 2241408 ~ 2242965 (+)
G262194 NA other upstream 4345278 1139352 ~ 1145007 (+)
G262060 NA other upstream 4779731 710110 ~ 710554 (+)
G261984 NA other upstream 4822903 665800 ~ 667382 (+)
G265391 NA other downstream 357321 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 778816 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004737 prkcea coding NC_007123.7 CM002896.2 25640480 ~ 25770232 (+)