CI01000063_05639341_05650366


Basic Information

Item Value
gene id CI01000063_05639341_05650366
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5639290 ~ 5650682 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05639341_05650366.mRNA
CTTTTAAAACTGCCATCCGGAGGAAGACTTTCAGTACCTCTGGAAAGCAAGATGGCCCAGACTCTGCCTCTGCTGCTGTTGGCCGTGCTGAACTCTCTGAGCTGCCACAGTGAAGTGAGAGCCAGGGACCCTGACGTGGAGGAAGAGGAAGCTGTGGGGGCTAGAGGAAGGGGACATCATATGCCTGGCACCTTTGGGATGCCACATAAACATCACAGCATCCCAGTGCCTCCAGATGGCACACCTCAAAACTCAGCACCCCCCTCAAAAGAGACTATACATCAACCTGAAAAAAGAGGAAACTGGTGTGCGTATGTAAATCACCGTGTGGTCACCACAGCTGTACTCTGTGCTACAGAGACTCAAACAGTGAAATCAGTGAACCCCTGTCCCGATGGAGCTCCTGACTGTCAAATCACGTATAGGCAACCCTCAGGGCCTGTGTACAAGCAGAAGCAGATAGCACTTTCTTCTATACACTGGAAGTGTTGCCCAGGCTATGGAGGATACAACTGTCTGGAAAAAGACAAACCTCCAGAGGACGAGAAACATTCTTCAGAGTCTGAGAGGAAATGTCCAGCAGGCCTCTGGCTCAGTGAGTGTCCTTCAACAGGAAAGGAAAAGTCAGCTGGCACTCGGGATAGCTGTAGAAGCAGTGCCCTATGCCAAGAGGCAAAAGCAACAATTACGTTTAAGAAGAAAAACAACAACTTACAGTCATGTTTTCCAAATTTCAAAAAGGTCCTAGAGAAGGTAAAATGGAAACAGACCTATTGGAAGACGGAAGCTGGGCTGACAAACCTCTACAAGAGGCTCCCATTCATGGTTCTTCACCAAACCGGAGCCCTGTTGAGGCTTGTTATCGATATTCCAGGTGCCAAAGAAGGGATCCATACCTCTCAGCCTCTGCCATTTCTTGATTCATCAATTCTGCTGTCAATGCATCGGTTAATGTCAAATATGATGAGTCAGCTTCAACCAGTGCTGGAAAGCTTCAATCAAACACTGGAGCATCTTTCCAGTGAGGTGGACACACTGTCTCAGGACTTGCAGCAGTTGCGGAAGGAACAGGAAGACAACAGATCCATCAGCAGGGGTGAAGGTCATAGTGGATCTATTGAGAAGAGCCTAGAGTACAGCCATCTCCAGATCGACCAAATGAAATCCCAATTGGATGCACAGAAAGACCAGATGGAGAGGGCCTTTCAGACCCAACAAGAACTGCTGAAACACAACCTAACGAAACTGAAGGAAGAGATGGATGATCGGATCAGTCAGAATCAGGATGCACAGGTGAATCTCCAGTCACTAACTGAAATGGTTGAGGAGGTGAGACTTGGCCAGAATGGGCTGGAAGAGGCACTGCAGAGACAGCATGCTGAGTTTGTCAATCTGAGTGGAGGTCAGCCAACACAAGTGTCAGGAGTGTGGGAGGCCATCACTCGGCTAGATGAGAAGGCACAAAGTAACTCTGTGCAGCTCAGCAGCTTGTCTGAGACTTCAAAGGATTCTGCTAGAATGATCAAGGATCTGCAAAGAGACTTATTGATCCTGGGACAGAGCCTAGAAGAGGTCAAACAACGCAATGAGGTCCACTTTGCAGAGACTGGTCTGGAGGTGGAGGCTAATCGCGTCAGGGTGCTCAACAGCATTGGTGAGCTTACATCTAACATAAGCGCACATGAGGGTCAGTTGAGAGAAATTGAGCTTGACCTGGACAACATCTATCATCAACTACAAAGAAATGATTCGGTAATTTCAGAGCAGGCCTGTAGCTGCAAGTCGATTGTCAGTTCACTAGCTAGGTTGGAGCTGGATGTGGCTAACGTGACACATTTAACAAGACAGAACCGACTTGCACTTGAGGAGGCAGATCTAGATAGGATTCAGGTCACTGAAATGGAGGATCTTCATCAGGGCCTGCTGAATATGAAGGAATCATTGGCCTTTGAGCAGAGCAGAAGCAGGAGTCTTCATGACAGTATTTCTCAGCTACAGGCTTCACTCCTGGACAGCCAGCAGGAGATAAAAGGCTTGAGAGAGCAGGACGAGAACAAGTCGGCTGAAATTCGAGGCCTATCAGCCACCTTCTCTTCCCTCCTAAATGATGCTGTACGCCACTCTAATGTCCTGGAAGTGCTACTTGGAGAAGAGGTCTTGGAATTCACACGCTGGTCACATAACCAAAAGAAAGAGTTCAGTATCCCAGATCTTTTACAGAGAATGCATGTGATGCAGCAAAAGATTGAGACACATGATATGAGTCTGAATTCTCTTCGGAGAAAGCATCCTGACGGAGATGAGATGAATAACGATGACCCGGTGACATACTCGGAGGGGACCGCCACAAAGAACCTTGTGAAGGACGCTGGAAGTTACCAGTCCTCATTAGAACCTTTGACTGGAGAGGAGGATGTGGATTACTCGGTCAGTGACTTCTGGAGTCTGGGAAAAGAGGTGGAGCAGTTAGCAGGTAGAATAACCATGTTGGAAGAGCGCTGTGGCAACTGCACTGAGCCCCCTGGTGGTTCTGTTCTGGAACTGCAAGCAGATATAGCATCCCTACGTCGAAGCCTAGAGGATCATTTGAGAATGTTTCAAAAACTTTTCAGTAATACAGAAGAACTAGTCAGCACGACTAGAAGCCTGAACCTAGATGAAGTTTGGAGGCTGGTGAGAAAGAAAGAAGGAAAGAGGAGGAGGGGGCACCAAAACCAAGAACAGATGAAAAGAGAAGAAAATACTTCCAGTGTGCGAAGCAAAAGACACGGTGAAACAGAACATGCTCAGTTACTACATCCCCCCGTGGTGTTCATCACAAGCCTGGACTACAGAATAGGACCAAACGGGAAACTTGCATCAAAAAATGTGGCTGTGAACTACGGTGGTACTTTTAATCCTACATCAGGGGTGTTCCAGGCCCCTGAGACGGGACTCTATCTCTTTTTAGTGACCTTAGACTTTGAGAGAGGCCTTTCATTGGCTGTACTGAAGCGTGGTGGAGTTCCAGTGGCCTCCATCAGACAGGAACAAGGGGAAAAGAGGGGACCAGTGAGCCGAGCCTCTTTGCTGGAGCTTCGGCGAGGGGAGACAGTTACATTAGAATTGATGCATGGATCATTACGAAAAGCGCAGCCTGGGGATAACACACTGTCTGGACTATTGCTCTTCATTACAGAGCACAAGGACATGCTGTGAAAAGATCTGGGTGAGCGACAAAGGCATGGGAGGATACACTCAAGTCTGTCGCACTGTGCGTCACTGCCAGACATACTGTAATTTGTATGCATGCATCCTCTTCTTGAAGGTGCCAAAAATTCTTGTTGAAATATTGTTTTGTAACTGGCTCTGGAATATTACTGAGAAAACAGGGTAAGTTAAAGAAATAAGGGGAAGACAGTTATATACCAGAAAAATACAAATACAAGTCCTTCTGTTGGTCTTTAAAATGTGGAGGATCTAATAATAAGGCAAGCATCACAGTATGGAAACCAGTTACTATGAGGTGATATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05639341_05650366.mRNA True 3514 mRNA 0.47 9 5639290 5650682

Neighbor

gene id symbol gene type direction distance location
CI01000063_05597755_05613489 GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S coding upstream 24644 5597324 ~ 5614654 (+)
CI01000063_05563124_05584474 NA coding upstream 54186 5563124 ~ 5585104 (+)
CI01000063_05490285_05556254 PRKCEA, PRKCE, PRKCEB coding upstream 82828 5490285 ~ 5556462 (+)
CI01000063_05466326_05468126 SIX3, SIX3A, SIX3B, SIX3.L coding upstream 170008 5466052 ~ 5469282 (+)
CI01000063_05400578_05406105 PPM1BB, PPM1B coding upstream 233013 5400578 ~ 5406277 (+)
CI01000063_05673923_05678546 NA coding downstream 23147 5673829 ~ 5678725 (+)
CI01000063_05894405_05894580 NA coding downstream 243723 5894405 ~ 5894677 (+)
CI01000063_05922194_05935361 ITGB3B, ITGB3 coding downstream 271512 5922194 ~ 5936249 (+)
CI01000063_05946534_05948489 NDEL1A, NDEL1B, NDEL1 coding downstream 295852 5946534 ~ 5948532 (+)
CI01000063_05954897_05957678 ARMC7 coding downstream 304215 5954897 ~ 5957753 (+)
G265198 NA non-coding upstream 148484 5490577 ~ 5490806 (+)
G265173 NA non-coding upstream 203650 5435399 ~ 5435640 (+)
G265142 NA non-coding upstream 256366 5382707 ~ 5382924 (+)
G265141 NA non-coding upstream 256811 5382191 ~ 5382479 (+)
G265156 NA non-coding downstream 18220 5668902 ~ 5689574 (+)
G265153 NA non-coding downstream 39534 5690216 ~ 5712916 (+)
G265246 NA non-coding downstream 54411 5705093 ~ 5706882 (+)
G265252 NA non-coding downstream 66938 5717620 ~ 5717948 (+)
G265253 NA non-coding downstream 69449 5720131 ~ 5720622 (+)
G262436 NA other upstream 2924773 2713615 ~ 2714517 (+)
G262423 NA other upstream 3396325 2241408 ~ 2242965 (+)
G262194 NA other upstream 4494283 1139352 ~ 1145007 (+)
G262060 NA other upstream 4928736 710110 ~ 710554 (+)
G261984 NA other upstream 4971908 665800 ~ 667382 (+)
G265391 NA other downstream 263101 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 684596 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004741 mmrn2b coding NC_007123.7 CM002896.2 25945560 ~ 25948479 (+)