CI01000063_05597755_05613489 (GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S)


Basic Information

Item Value
gene id CI01000063_05597755_05613489
gene name GDH1, GLUD1B, GLUD1A, GDH2, GDH3.2, GLUD1, GDH03, GDH01, GLUD1.S
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 5597324 ~ 5614654 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_05597755_05613489.mRNA
ATATAAAAAATATGCATCTTTATTAATGTTTTCAAATGAAAAGTCATTTTGAAAACGTAGTACTATGAGGGTTTTTAAGTTGTTAATGTTGTAGGTGAGCTTAAATAATAGCAATAATTTTCATAAATTAATGAATCAGTTAGCTGAAAGAATAAGAGTTTTAAAAGTAGCGCGTGCGTTTCCTCCTCCTTCCTGGTACGCCTTGACCTTCCGTCAGCTCGCGCGACTCCTCCAAACACGCCGCTGCCTTTTAAAGCGCGAGACGGCATGAGCGCTGTCACTTTGACACTGAACGAGGCAGGCTCAGGAGCTTTCTTCGTCTCGTTCATTTACCCCCCTTTTCGTTTCCCTTTTTCACCTCGTCGATAACCCATCATCCTTTAATTTCTTCTTTCTCCATTGTACTGTAACTTTCAAAGCCCCTTGTCGCCATGTACCGGTATTTTGGGGAGCTGCTTACTCGCGGAGCGGGTAACGCTCTGGCCTCGGGATGCGTCGAGTCCGCTCTGCCGGCTTCCTCATCTTTGCTGAGGGTGCGTCACTACAGCGATGCCGCTGACAAGGAAGATGACCCGAACTTCTTTAGGATGGTGGAGGGCTTCTTCGATCGCGGCGCTGCTATTGTCGAAAACAAGCTGGTGGAGGACCTGAAGACCCGGGAGACGCCGGAGCAGAAGAGACACCGTGTGCGGGGGATCCTCAAGATCATCAAGCCCTGCAACCACGTCCTGAGCGTGTCCTTCCCCATCAAGAGAGACAACGGAGAATGGGAGGTTATCGAGGGTTACCGGGCACAACACAGCCAGCACAGAACTCCCTGCAAGGGAGGTATCCGATACAGCATGGATGTGTCTGTGGATGAGGTTAAAGCTTTGGCCTCCTTGATGACATACAAGTGTGCTGTTGTGGATGTGCCATTTGGCGGAGCTAAAGCTGGAGTGAAAATCAACCCCAGGAATTACTCTGATAATGAGTTGGAGAAAATCACAAGAAGATTCACCATTGAGTTGGCGAAAAAGGGATTCATTGGACCTGGCATTGACGTACCCGCCCCTGACATGAGCACCGGTGAGAGGGAGATGTCCTGGATCGCTGACACCTATGCTAACACTATTGCCCACACTGATATCAATGCCCATGCCTGTGTGACTGGTAAACCCATTAGCCAGGGTGGCATCCATGGCAGAATCTCAGCCACTGGTCGTGGAGTCTTCCATGGCATTGAGAACTTTATCAATGAAGCCTCCTACATGAGCAAACTGGGCCTGACCCCTGGATTTGCTGACAAAACATTCATTATTCAGGGTTTTGGCAATGTGGGTCTGCATTCCATGCGTTACCTTCACCGTTATGGTGCCAAATGTGTGGGAATTGCTGAGATCGACGGCAGCATCTGGAACCCCAACGGCATGGACCCCAAAGAGCTGGAGGACTACAAACTGCAACATGGTACCATTGTGGGCTTCCCCAACTCTCAGCCGTATGAGGGAAACATTCTGGAAGCTCAGTGTGATATCCTCATCCCTGCAGCTGGAGAGAAACAGCTGACCAGGAAGAACGCTCACAATATCAAAGCCAAGATTATTGCTGAGGGTGCTAATGGTCCCACTACACCAGATGCTGACAAGATCTTTATAGAGAGGAACATCATGGTCATTCCAGACATGTACCTGAATGCTGGTGGTGTCACAGTCTCCTACTTTGAGTGGCTGAAAAACCTGAACCATGTCAGCTATGGTCGCCTGACCTTCAAGTACGAGAGGGACTCCAACTACCACCTGCTGATGTCTGTGCAAGAGAGTCTTGAAAGGAAGTTTGGAAAGCAGGGCGGTCCCATCCCCATTGTTCCCACCGCTGATTTCCAGGCCCGCGTAGCTGGCGCCTCTGAGAAGGACATTGTGCACTCTGGTCTTGCCTATACCATGGAGAGGTCGGCCAGGCAAATTATGCGCACGGCAAACAAGTACAACCTGGGCTTGGATTTGAGGACGGCAGCTTACGTCAATGCCATCGAGAAGGTCTTCAAGGTGTACAGTGAGGCTGGCCTGACCTTTACATAAATGACACACAATTCCCTTTGCAAAAAGAAGACAAAAACACCATAAACCTCTCGATTCCCCCTCCAACCTTTTTAACATATGAAAATTTACTTCAGCCTAACCCCCATCTCCTCTATTATAACACCATCACGCTGTCATATCTTAAAATCTCCGTCCTCATGAGTTTGAGAACTATAAAGTGGTTTCTTCTGTTCTGAGGCTGCAGTTTTCACTGCTTTGCTGTATATGATGTGGTCTCAAAACAAACTGGCACCAATATTCAGGTTTCTCAAGTGTTTCTTGTTGTAACTTGTTTATTTTGTCCCTGATTTTTGTATTGATCTGTGGTAAACTAACGTGGTCCTCTTCAAATGCAGCTGATTTTAAATGTATGTTGATTTGTCATATTGGACCTGGCTTCCTCTCTCCTCAAAATATCACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTACAGTAATGAAGAGCGTTAAAGATGCCTTACACCTGTGAGCAGGAGTTTTATACTCAGAGAAATTATTTTCTTTGTCACTATAATTCATGTAGTGCATCACACAAAAGGAAACCCAGACATGTTTTGCCTCATCTCAATGTTTTGACCTAGAGATGTAATGAAGTTCTAGCTAACAATGTGCAGTACATTTAGGTACAGACTTTTTTTGTATCCGAGGCAGTTCATACCCCATAACTTTTAGAGATCTGCTAGATGTTAGCATGCGGCTAATGTTAAACCTAGATGGCCCGGGGCACTTGTGCTTAAATGAGAGCTGGAAGTTGCTCACCAAGCTTATCTGCACCCATATCTGGAACTATGTTTTGGAAATGTATATTGCCTTTTTTGTTGAGA

Function

symbol description
glud1a Predicted to enable glutamate dehydrogenase (NAD+) activity. Predicted to be involved in glutamate catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including cardiovascular system; digestive system; nervous system; periderm; and pronephros. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 6; hyperinsulinism; and hypoglycemia. Orthologous to human GLUD1 (glutamate dehydrogenase 1).
glud1b Predicted to enable glutamate dehydrogenase (NAD+) activity. Predicted to be involved in glutamate catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including blastomere; digestive system; fin; mesoderm; and tail bud. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 6; hyperinsulinism; hypoglycemia; and late onset Parkinson's disease. Orthologous to several human genes including GLUD1 (glutamate dehydrogenase 1).
glud1 Enables anion binding activity and glutamate dehydrogenase (NAD+) activity. Involved in glutamate biosynthetic process; glutamate catabolic process; and positive regulation of insulin secretion. Located in endoplasmic reticulum and mitochondrion. Implicated in familial hyperinsulinemic hypoglycemia 6; hyperinsulinism; and hypoglycemia. Biomarker of Alzheimer's disease.
gdh2 Enables glutamate dehydrogenase (NAD+) activity. Involved in nitrogen compound metabolic process. Located in mitochondrion.
gdh1 Enables glutamate dehydrogenase (NADP+) activity. Involved in glutamate biosynthetic process. Located in nucleus. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 6; hyperinsulinism; hypoglycemia; and late onset Parkinson's disease. Orthologous to human GLUD1 (glutamate dehydrogenase 1) and GLUD2 (glutamate dehydrogenase 2).

GO:

id name namespace
GO:0032024 positive regulation of insulin secretion biological_process

KEGG:

id description
K00261 GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_05597755_05613489.mRNA False 3217 mRNA 0.42 13 5597324 5614646

Neighbor

gene id symbol gene type direction distance location
CI01000063_05563124_05584474 NA coding upstream 12220 5563124 ~ 5585104 (+)
CI01000063_05490285_05556254 PRKCEA, PRKCE, PRKCEB coding upstream 40862 5490285 ~ 5556462 (+)
CI01000063_05466326_05468126 SIX3, SIX3A, SIX3B, SIX3.L coding upstream 128042 5466052 ~ 5469282 (+)
CI01000063_05400578_05406105 PPM1BB, PPM1B coding upstream 191047 5400578 ~ 5406277 (+)
CI01000063_05281800_05302429 NA coding upstream 294825 5280655 ~ 5302499 (+)
CI01000063_05639341_05650366 NA coding downstream 24644 5639290 ~ 5650682 (+)
CI01000063_05673923_05678546 NA coding downstream 59183 5673829 ~ 5678725 (+)
CI01000063_05894405_05894580 NA coding downstream 279759 5894405 ~ 5894677 (+)
CI01000063_05922194_05935361 ITGB3B, ITGB3 coding downstream 307548 5922194 ~ 5936249 (+)
CI01000063_05946534_05948489 NDEL1A, NDEL1B, NDEL1 coding downstream 331888 5946534 ~ 5948532 (+)
G265198 NA non-coding upstream 106518 5490577 ~ 5490806 (+)
G265173 NA non-coding upstream 161684 5435399 ~ 5435640 (+)
G265142 NA non-coding upstream 214400 5382707 ~ 5382924 (+)
G265141 NA non-coding upstream 214845 5382191 ~ 5382479 (+)
G265094 NA non-coding upstream 230058 5360934 ~ 5367266 (+)
G265156 NA non-coding downstream 54256 5668902 ~ 5689574 (+)
G265153 NA non-coding downstream 75570 5690216 ~ 5712916 (+)
G265246 NA non-coding downstream 90447 5705093 ~ 5706882 (+)
G265252 NA non-coding downstream 102974 5717620 ~ 5717948 (+)
G265253 NA non-coding downstream 105485 5720131 ~ 5720622 (+)
G262436 NA other upstream 2882807 2713615 ~ 2714517 (+)
G262423 NA other upstream 3354359 2241408 ~ 2242965 (+)
G262194 NA other upstream 4452317 1139352 ~ 1145007 (+)
G262060 NA other upstream 4886770 710110 ~ 710554 (+)
G261984 NA other upstream 4929942 665800 ~ 667382 (+)
G265391 NA other downstream 299137 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 720632 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004740 glud1b coding NC_007123.7 CM002896.2 25845494 ~ 25881944 (+)
bowfin (Amia calva) AMCG00003174 gdh01,gdh3.2,glud1 coding CM030139.1 CM030139.1 13848510 ~ 13871340 (-)