CI01000063_06222033_06227075 (ZNF438)


Basic Information

Item Value
gene id CI01000063_06222033_06227075
gene name ZNF438
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 6222033 ~ 6227665 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000063_06222033_06227075.mRNA
GATCTTCAGTGACAGTGTGGCAGACATGAAAACCCAAGAGCACCGTTCCAGCCCTCTGAAATCACACACACAGAGTGATGCACGGCCCCACTCCCAAATTAAAGGTCTCCAGTTTCGCAGCATTGCCCCCAAAGCCCCAGCAGTGGTTCCATCATCTGCGGTTCTATCCTGCCAACCTCCCTCAGCCCTTCCAGAAGCATCCACAGCTGTCAGCCCCAAATCCATCCTGGTCCCTGCCCAGAACTATGCACTCATGCAGGTGGCTGGACAAGAGGGAACCTTCTCATTGGTGGCCTTACCTCAGACACAACAGCAACAGCCAATCCAGAAGAACCTTAAGCTGCCTATTCCTAGATACCAACCGGTGAGAAGCAAGAGCACTCCAGAAAAAGGCAGTAGCAAGATGCCGAGTCCAGCCAAGGTTTCTGCAACCGCACAAGCTCAATCATCTGCCGTAAAATCAGACCAGAGTTCAGACCCAGTATCTGAGCAGCTTATGATCGACACTCCTACTTCATCAGAAATCAACATTGCACCCTTATTCCCAGGTTCACAGACAGATCGAAAAATGGAACAAAAAAGCGATGTCCGTCCACTCAAAAACCAGCACTACCCTTCTGGAACCTCCCTTGTTGCCCCTGTCAAGAAAATCTCACCAGTTAAAACTCAAATAGAGGGTCCATCCTCGGCTGGCAGTGCCATCACAGTTCTCTCTCCCACTATCTTTAGCAAAGCTGTTCAGATCATTCCATCTCCACCCAAGGGCAAGCTGCCCATCCTGCCCTATGCCAAGGTGAAAAACTCCCTCCTGGTACCAACCAGCCTTGCCAGCACCCCTTTCTCAGACAAGCAGACTGTGAGTGGAGCCAAAAGCAGCCTGAAAAGCCCTCCAGACAACAACATCAAGTCCACAGACAGCAAAGTTAAAAGTGAAAGCCTGAGCCAAGACCACAACAACACCCAATTCAAGAAACCTCCAGGCAAGAAACGGGGGAGGAAGAGGAAAACCATGGAGGATATTCTGGCCTTTGAAGCCCGAAAGAAGAGATCCTTGTCATTTTTCAGAAGGAGGGTACCTGAGAAACCTCCACTTGGTGTTCCAAATTCTGCCTCTCAAGAGAAGTTGCTGGATATATCCAAAAAGTATCGTAGTATTCGTCCCAAGCCGGTACTGGTAATGGAAACCACTATTCCACAACTTGTACCGCTTCCTTCTTTGTCAACACCAGAGAGCCCTGATCAGGAACTACTATTAGGACAACAAATATCAGGAAAACCACTGAGTGTTCCACAGTCTACTGATCAGCAGCCTGTGGCAGATTGTAAAGGTGGTGGAGGTGTGATTTACACAAGTCGTCCGTTGCACCGATGTCCTACCTGCAGCAGGTGTTTCCAGTTCAAGCATCACTTGCAGAGCCACATGAACAGCCACAGTAACCTGCGGCCCTATGTCTGTCCGGTATGCAGGAAGGCCTATGCTCACTCAGGCAGTCTTAGCACTCATATGAAACTGCACCATGCGGAAAGCAGGCCCCGGAAGAGCCTTTGCTGTGAATTCTGCGATAAGTCATTTGGCTATGTGGGTGTCTACTTCAGCCATTTGAGAGAGGTACACCGGGTAATACTCACCGTTGAGCCATCCATCAGTCAACATGAAGAAAACATGTCTGTAGAAGAGTCTTCAGAAGCTGATGAACAGGCCTCAGAACAGCGAGTTGACCCAGTCGAGCTACAAATTAAGTGTGGGCGCTGCCAGGCCATCACACCTACTTTTGCTGACATGAAGCTGCATTTGTTGTACGTGCATGGAGAGGAAGTCCAGGTCCGACCGAGAGATGGGGCCACGTGCGGGGGCCGTGAAGCAGAGGATGAGCTGGTCAAACATGCAGCGCATTACTGGAGGCAGCTCAATGAGAAACGCAACCTAGTGCACTGCGGCACCTGCAATGAGGAGTTCTTCTCCTTTTCCAAGTTCAAATGCCACCTCCATTCTCACCATCAAGGAGCTAGAGAGAGTCAGAAAGAGGAAGAGGTGGAAGAGGAAGTGGTAGGTAAGGAGGGCTATGTATTGAGGGGCCTCAATAAAGGTATATCCCTGAGGGTGGGATCTCACTTTAACTGCATCCTTTGCAGTAAGGTCTTTAATAAAAGACAAGAAGTTATTGAGCATTGGAGGGCACAGCACAACTGTGAAAATCCCACCCTTCTTTGGGATGTCCTGGACTTTAGAGGGGAGAACAAGCCTATTGATGGGCCAAACTAACTGCAAATGGGTAATTTATTATTTGCTCCATGTGTTGATTGTGTGGTTTATGCAGAAAAAATCCACTAATAGACATTTTTTTTATGTTGTTGTTGATGTTTTGTTTTGCACTGTTTTTAATATCACAAATGTTGTTTTGTAATGCTTGAATTTTGTAATGTTTGTTTTATGTTTTTTGTTTTTGTTTTTAATGTTTTATGCATTATAAAATTATCCATAACATTCAAATCACAAACCTCAAATTCAATCAAAAACATTACCGTGGCCCAGCTGTAGACGTAATATAACTGCCTGCAAATGAAAGACCCAAGGATGATAATCATAATTTTTTAGGTTTGTGTGGAAACAGTGTGTGCTAGTAACTGCTTCAGCTAAAGTGAATCAGGCGAAACAGACTAACAAAGGCTCATCAAAATCACATTGCCACTCAGACAAATTGAAAATTTGCAATAGACTGAATACAAATGGGGCATGATTAGCATGCTTGAAATAACATGTCAAAGAACATTCAAAGTAATACGAATTATCAGTGACATTCCACAAACACATAACCATAATCACACAGTTTCAGTCCTCATTCCACAACTAAA

Function

symbol description
znf438 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF438 (zinc finger protein 438).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000063_06222033_06227075.mRNA True 2853 mRNA 0.46 3 6222033 6227665

Neighbor

gene id symbol gene type direction distance location
CI01000063_06157144_06165234 NA coding upstream 56705 6154985 ~ 6165328 (+)
CI01000063_06035175_06080992 ARHGAP12, ARHGAP12B coding upstream 141041 6035175 ~ 6080992 (+)
CI01000063_05973598_05981144 NA coding upstream 240889 5973598 ~ 5981144 (+)
CI01000063_05954897_05957678 ARMC7 coding upstream 264280 5954897 ~ 5957753 (+)
CI01000063_05946534_05948489 NDEL1A, NDEL1B, NDEL1 coding upstream 273501 5946534 ~ 5948532 (+)
CI01000063_06264735_06268961 MSL1B, MSL1 coding downstream 36835 6264500 ~ 6269050 (+)
CI01000063_06276811_06289690 FBRS coding downstream 48387 6276052 ~ 6289732 (+)
CI01000063_06293923_06317422 SRCAP coding downstream 66258 6293923 ~ 6319073 (+)
CI01000063_06320398_06332096 TTLL6 coding downstream 92733 6320398 ~ 6332132 (+)
CI01000063_06335618_06338138 HOXB8B coding downstream 107953 6335618 ~ 6338283 (+)
G265345 NA non-coding upstream 33364 6164331 ~ 6188669 (+)
G265425 NA non-coding upstream 86661 6134041 ~ 6135372 (+)
G265380 NA non-coding upstream 91289 6037215 ~ 6130744 (+)
G265382 NA non-coding upstream 168622 6041043 ~ 6053411 (+)
G265364 NA non-coding upstream 251563 5967593 ~ 5970470 (+)
G265456 NA non-coding downstream 30905 6258570 ~ 6258858 (+)
G265457 NA non-coding downstream 31392 6259057 ~ 6259267 (+)
G265334 NA non-coding downstream 42799 6270464 ~ 6273883 (+)
G265460 NA non-coding downstream 95612 6323277 ~ 6323624 (+)
G265463 NA non-coding downstream 110987 6338652 ~ 6338867 (+)
G265391 NA other upstream 303004 5913783 ~ 5919029 (+)
G262436 NA other upstream 3507516 2713615 ~ 2714517 (+)
G262423 NA other upstream 3979068 2241408 ~ 2242965 (+)
G262194 NA other upstream 5077026 1139352 ~ 1145007 (+)
G262060 NA other upstream 5511479 710110 ~ 710554 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004753 znf438 coding NC_007123.7 CM002896.2 26877381 ~ 26964998 (+)