G262098


Basic Information

Item Value
gene id G262098
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 1850356 ~ 1854092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU297505
GATATATTTAAGAGACTCTAAAACATCCTCTACGACAGTATTTTCACAATACATCTATTGACACGTGATGGCGTATATATACTTGTATCTTTAAAACTATTCACAAAATATAGCTCATGGATGCGCCAAACATGTATAAAAATATGTACTACATCCATTGAAATATGTACACAATGTGCAAAACATATGGCATACAAATGATGATTGATCTCCCGCTTTGGAGCATGTTCAAAGGCGGCAGGAAATATTGCCCAGTGTCATCACCACTGATACATAATATACATTAATATTTGATAAAGAGCATGATATCTAGATGAGTCCAGCAGACGTTGTTGAAAATGAGGAATCCTAAATCTCTACATGAAGCTTAACAGGAGCTGAGCTTTGACATCCTAAATGGCAAAAACGCAAGCCACAGGTTTCCAGAGCTCAGCCACAACAGACGTTCATGCAAATAGATGACGTAAAACTGAAGAGATGCTCTGATATCTCATCTACTGCATATACCGTATACAATACAGCACTGTATATAAAATGCAAGTTATTGCTTTACTCTCCAACTGCACTATTAAACAGCAAACGTGACACTTGTATTAACTCTTCATCTCCAACCTTTTTACAATCACCTAAATCCAATAAAGATTAAACATTTTCTCCAAGAAAAATCCTCAACCACCTACACTACCATACAAAAGTTTGGAATCAGTAAGATTTTTCAATGATTTTGAAAGAATTATTCTCACAAAGGCTGCATTTATTTTATCAGCCTTTACTGTAATAATATTTCATAATATTACTATTTTAAATATTTTTTAAAATGTAATTTATTCCTGTGATGGCAAATCTGAATTTTCAGCAGCCATTACTCCAGTCTTCAGTGTCACATGATACTTCCGAAATCATTCTAATATCCAGATTTGCAGCTTAAAAGTGCAGTGTGTAAATTTTTGCGGCATCTAGCGGTGAGGTTGCGAACTGCAACCAAAGGCAGCTCACCCCTCCCTTTTGAAGCAAAATAGAGAAGCTACGGTGGCCGTCTGGCCAACATTAGTCAAAGATGTCATCGTCTGAGACAGCAGAGAGTTCATTAGCCAGCCAAGCAATGAGGTTTCTTCTTACTTCTAACAAAGAACGGTCTCTGCTTCTAATAAACCAGACGACTACTACTACTTCTTTGTGCGTATTCAACGTATTGACGATGCAAGCTGCCTCTAAACACTCGAACGATTTAGAAGAACAACAACATAGCGATGAAACACGCTCTATAGAGTGTTTGTCCGTTTAGGGCTGCTGTAGAAACATGCCGGCACAAAATGACAACTTGACATGGAAGTGGGACCCGCGGTGTATGTAGATACTCATTCTAAGGTAATAAAAACATAACGGTTCATTATGTAAGGTCTTTGTACACCACTGAAAACATAGTTATGTTTATTGCATTTCTGTGAATAGATCCTCCCAAATCTTACACATTGCACCTTTAAGAAATAAAAAGCATATTATTATTAAAGTTAAAAACAGTTGTGCTGCTTTATATTTTTGTGGAAACCTTGATACATTTTTTTTTTTAGAATTCTTTGATGAGCAGAAAGTTCAAAAGAACAGCGTTTATTTGAAATAGAAATATTTTCTAACAGTGTAAATGTCTTTACTGATACTTTTGATCAATTTTATGCATCCTTGCTGAATAAAGGTATTAATTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGACCCCAAACTTTTGAAGGTAGTGTATATATCTACATGAAGTGGCATAGTACAATATTTGGCCTCTTTGGTCATTTGAAACCCACAGAAGCTCTAAAACACAAGAGGCATCACATGATGGAAATCTAGCGATGTCAGTGTATACTAGTCTTTCTCCTTCACTTGCTTGTCAGAATAATAGTTTAATAGGGGTACATAAAAAATTACTCCAGGCTGCATAATAACAGCGGTCAGTAATGCCAAAAATGGCTCTGAACAGTCAGACACATGTATTATTCCTTATAAATTTGTCCCCATAGCTACACACAGCAGTGAATGATTATACTAGTTGAGACTAGTATTTGGCATTTTTACTTCCCTGGAGAGGCCACAATTTGGACAGTACGCAGAGCAAACAGTACAAAGCCTTAAAAACTAAGCCGATGAGCATCGTTAATCATCCGACTTTTGAGTGGACGACACATGTAACACTGAAGCACAAAAAGCTGATAAAAGTTTTCTTTTATAAAAGCTCATCTGTAAAGGTGCTTTAACGCTGTGCGGTTGATCTAACTGTGATGAGCAGTTCGTCACTGCAGCAGGAAAGTGCTGTACATCTTGTACAAATAACGTATAATTGAAACCCCCTTTGGATCAAACAAAACTCGCTTCACATTTGAGAGAGGTGAGTTCAAAGCCAGTGGACGCATATTGCCTTGCTGAATGGAAAGGAGTCACGTCAGAACAGGATATATATATATATATATATATATATATATATATACGAATAATAATTTTTTTCCATGAGGTGGCTGACAACATGAAAGAAAAACATAGATAAAATCAGAAAGGGCTAAAAAGAAAATCAACAAGAGGAAGTTTCTCTGAAAGATATCACATCAATTTGATTATTCACATGCTGCCAAGATATTTTCATATATATATATAATGTTGTTCATTTACAAAGATATTTCATTTGGATGGTCTGATTTCGAACAAAAAGGCAGCAAAACAGACAAAGACGCTCAAGCATACAAACACACACACACACACACAGATATTTAGTACAAGAACCTGACAAAACAGGCCTGCTAAAATTTTCAGAACAATGAAAGCAGACAAATCTGGATCATTATGTTCTCAGACTCCCTCAACAAATGAATTATTAAGCTGCCAGTGACATTTAGCATGCAGTAAAGTCATCAGTAACCACTTCAACCGTCTGGTTTGCTTCTGAAACAACCCCAGAGAGCATTTTCAAAACTCCATTTACAGGAGGAATAAACAGTACAAAGATCCTCTATGTTCATACATAACATATAGTGCTGTTAGAGAGATCACTGTATTTAGTGTCAGTTGTCACTTCTGATGGCTTCATTTACATAATCTCTTTCTAAAAGCAGCGTCTCTAACGGAGCTTTGTTCCATGGCATCAATAAGAAGCACATAACGCAAAATATAGTGACCACTGTGCGAACCAAACTGAGAAAAGTGTGGGAAAAATTTCTGGAACTAGAACGTCCTTACAGTATGATGCACCTAAAATCAATTGAGTCGAACACACAACATTCCACTGAAGTGAAGAACACACTTCACAATTCACATACACACAAACAAGGGGTTGGACATCCAACAAGTCAGACGTGACAGTTTTTCTTTTTTCTTTTCTTTTTTTATACAAATATTAGTTCTCGTAGATTATTTACATCAAATTTGATTCATTTCAGACCCTTTCACAACAGTATATAACTGTTAATCAAAATTGGACGTTATTTTTTTTTTCATTTGGCTGAAACTGAGAGCTGATCCATGACATAAATTAAGTCTTCAAAATAGGTTTTCATGTTTCTAGGACTGAAGAAATGAATCTGTCTGCGATTCTTAATCCACATCAAGCCAAATGCTCTTGGCAAACTCATCCAAGATTGGCCATTTATGAATCTGATATTCCAGCTACTTAAACCATGAATAAACCATGAATTGATTCCTCTGGTCTGCAGTCAGTCATCCTTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297505 True 3737 lncRNA 0.36 1 1850356 1854092

Neighbor

gene id symbol gene type direction distance location
CI01000063_01824468_01849446 NA coding upstream 902 1822854 ~ 1849454 (+)
CI01000063_01784971_01788682 NA coding upstream 61458 1784971 ~ 1788898 (+)
CI01000063_01739754_01764028 RHBDF1B, RHBDF1, RHBDF1A coding upstream 85584 1739244 ~ 1764772 (+)
CI01000063_01692878_01697954 NA coding upstream 152278 1692394 ~ 1698078 (+)
CI01000063_01675750_01678399 HBBE3 coding upstream 171898 1675501 ~ 1678458 (+)
CI01000063_01950136_01991996 SHISA9A coding downstream 94082 1948174 ~ 1992128 (+)
CI01000063_02207083_02208978 MAFF, MAFFL coding downstream 352991 2207083 ~ 2209144 (+)
CI01000063_02259693_02263566 NA coding downstream 405387 2259479 ~ 2263765 (+)
CI01000063_02287935_02290399 NA coding downstream 432249 2286341 ~ 2291640 (+)
CI01000063_02329534_02344024 ZC3H7B coding downstream 475442 2329534 ~ 2344971 (+)
G262122 NA non-coding upstream 36870 1811508 ~ 1813486 (+)
G262333 NA non-coding upstream 44171 1805964 ~ 1806185 (+)
G262314 NA non-coding upstream 112035 1737798 ~ 1738321 (+)
G262104 NA non-coding upstream 163992 1682219 ~ 1686364 (+)
G262101 NA non-coding upstream 194307 1655202 ~ 1656049 (+)
G262511 NA non-coding downstream 146770 2000862 ~ 2001064 (+)
G262517 NA non-coding downstream 153905 2007997 ~ 2008296 (+)
G262518 NA non-coding downstream 154480 2008572 ~ 2008788 (+)
G262525 NA non-coding downstream 162270 2016362 ~ 2016577 (+)
G262526 NA non-coding downstream 167555 2021647 ~ 2021851 (+)
G262194 NA other upstream 705349 1139352 ~ 1145007 (+)
G262060 NA other upstream 1139802 710110 ~ 710554 (+)
G261984 NA other upstream 1182974 665800 ~ 667382 (+)
CI01000063_00533801_00557577 MPP3B other upstream 1292022 533801 ~ 558334 (+)
G261700 NA other upstream 1575906 252412 ~ 274450 (+)
G262423 NA other downstream 387316 2241408 ~ 2242965 (+)
G262436 NA other downstream 859523 2713615 ~ 2714517 (+)
G265391 NA other downstream 4059691 5913783 ~ 5919029 (+)
CI01000063_06335618_06338138 HOXB8B other downstream 4481186 6335618 ~ 6338283 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G214476 NA non-coding NC_053132.1 CM020929.1 20467902 ~ 20468602 (-)