Gene
RNA
| Item | Value |
|---|---|
| gene id | G266176 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000063 |
| NCBI id | null |
| chromosome length | 7808773 |
| location | 6651817 ~ 6653969 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU302119 | True | 1614 | lncRNA | 0.43 | 4 | 6651817 | 6653969 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000063_06641523_06649617 | ETV4 | coding | upstream | 1995 | 6641523 ~ 6649822 (+) |
| CI01000063_06579194_06585204 | MEOX1 | coding | upstream | 66269 | 6578738 ~ 6585548 (+) |
| CI01000063_06491111_06495718 | NA | coding | upstream | 155522 | 6489730 ~ 6496295 (+) |
| CI01000063_06459591_06473697 | DUSP3, DUSP3A | coding | upstream | 177865 | 6458650 ~ 6473952 (+) |
| CI01000063_06428760_06430410 | ARL4D | coding | upstream | 221034 | 6428444 ~ 6430783 (+) |
| CI01000063_06663858_06707601 | SPATA20 | coding | downstream | 9889 | 6663858 ~ 6707704 (+) |
| CI01000063_06733190_06869248 | CACNA1G | coding | downstream | 79221 | 6733190 ~ 6869248 (+) |
| CI01000063_06928230_06954632 | CACNA1G | coding | downstream | 274261 | 6928230 ~ 6954632 (+) |
| CI01000063_06982270_06983358 | UTS2R | coding | downstream | 327977 | 6981946 ~ 6983455 (+) |
| CI01000063_06990713_06993818 | NA | coding | downstream | 336671 | 6990640 ~ 6993852 (+) |
| CI01000063_06408168_06418415 | NBR1 | non-coding | upstream | 232491 | 6407762 ~ 6419326 (+) |
| G265463 | NA | non-coding | upstream | 312950 | 6338652 ~ 6338867 (+) |
| G265460 | NA | non-coding | upstream | 328193 | 6323277 ~ 6323624 (+) |
| G265334 | NA | non-coding | upstream | 377934 | 6270464 ~ 6273883 (+) |
| G265457 | NA | non-coding | upstream | 392550 | 6259057 ~ 6259267 (+) |
| G266294 | NA | non-coding | downstream | 367336 | 7021305 ~ 7021509 (+) |
| G266299 | NA | non-coding | downstream | 372078 | 7026047 ~ 7026289 (+) |
| CI01000063_07120937_07121851 | CDK5R1B, CDK5R1 | non-coding | downstream | 439308 | 7120602 ~ 7125013 (+) |
| G266208 | NA | non-coding | downstream | 461068 | 7115037 ~ 7117317 (+) |
| G266171 | NA | non-coding | downstream | 474347 | 7128316 ~ 7149391 (+) |
| CI01000063_06335618_06338138 | HOXB8B | other | upstream | 314457 | 6335618 ~ 6338283 (+) |
| G265391 | NA | other | upstream | 732788 | 5913783 ~ 5919029 (+) |
| G262436 | NA | other | upstream | 3937300 | 2713615 ~ 2714517 (+) |
| G262423 | NA | other | upstream | 4408852 | 2241408 ~ 2242965 (+) |
| G262194 | NA | other | upstream | 5506810 | 1139352 ~ 1145007 (+) |
