G266383


Basic Information

Item Value
gene id G266383
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000063
NCBI id null
chromosome length 7808773
location 7289487 ~ 7290047 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU302341
TTGGAGCGGTGAAGGTCGGCTGTCATCCTGCGTCTGCGCAGGGCCCGCTGTAGTTGGTGATGTGCAGAGTCCCAGACCCTCTCGCTCTCTCGGAACCAGTAGTCGACTGATGGAACTTCCGATGGTTCCCCGGTCCAGGGGAACAGTGGGGGTTGGTAACCGAGTACGCACTGGAATGGAGTGAGTCCAGTAGATGGTTGACGCAGGGAATTCTGTGCGTACTCTGCCTAACCCAGATACTGGTTCCAAGAGTTCTGGTGGCCGTGACAGAAGGTACGGAGGAAGCGGCCAATCTCCTGGATCTTTCTCTCCGTCTGCCCGTTCGACTGAGGGTGGTAGCCGGATGAGAGACTGACGGTCACACCTAGGAGCGAGAAGAAAGCCTTCCATACCCGTGAAATGAACTGGGGTCCTCTGTCTGAGACGATGTCTTCGGGAATTCCGTAGTATCTGAACACGTGGTTAAACATAAGTTCAGCTGTCTCCATGGCGGTAGGTAGGCCTGCCAGGGGAATCAGACGACATG
>TU302346
TTGGAGCGGTGAAGGTCGGCTGTCATCCTGCGTCTGCGCAGGGCCCGCTGTAGTTGGTGATGTGCAGAGTCCCAGACCCTCTCGCTCTCTCGGAACCAGTAGTCGACTGATGGAACTTCCGATGGTTCCCCGGTCCAGGGGAACAGTGGGGGTTGGTAACCGAGTACGCACTGGAATGGAGTGAGTCCAGTAGATGGTTGACGCAGGGAATTCTGTGCGTACTCTGCCTAACCCAGATACTGGTTCCAAGAGTTCTGGTGGCCGTGACAGAAGGTACGGAGGAAGCGGCCAATCTCCTGGATCTTTCTCTCCGTCTGCCCGTTCGACTGAGGGTGGTAGCCGGATGAGAGACTGACGGTCACACCTAGGAGCGAGAAGAAAGCCTTCCATACCCGTGAAATGAACTGGGGTCCTCTGTCTGAGACGATGTCTTCGGGAATTCCGTAGTATCTGAACACGTGGTTAAACATAAGTTCAGCTGTCTCCATGGCGGTAGGTAGGCCTGCCAGGGGAATCAGACGACATGACTTGGAGAATCGATCTACGATTACGAGGATGCAG
>TU302342
GGAACAGTGGGGGTTGGTAACCGAGTACGCACTGGAATGGAGTGAGTCCAGTAGATGGTTGACGCAGGGAATTCTGTGCGTACTCTGCCTAACCCAGATACTGGTTCCAAGAGTTCTGGTGGCCGTGACAGAAGGTACGGAGGAAGCGGCCAATCTCCTGGATCTTTCTCTCCGTCTGCCCGTTCGACTGAGGGTGGTAGCCGGATGAGAGACTGACGGTCACACCTAGGAGCGAGAAGAAAGCCTTCCATACCCGTGAAATGAACTGGGGTCCTCTGTCTGAGACGATGTCTTCGGGAATTCCGTAGTATCTGAACACGTGGTTAAACATAAGTTCAGCTGTCTCCATGGCGGTAGGTAGGCCTGCCAGGGGAATCAGACGACATG
>TU302345
CAGATACTGGTTCCAAGAGTTCTGGTGGCCGTGACAGAAGGTACGGAGGAAGCGGCCAATCTCCTGGATCTTTCTCTCCGTCTGCCCGTTCGACTGAGGGTGGTAGCCGGATGAGAGACTGACGGTCACACCTAGGAGCGAGAAGAAAGCCTTCCATACCCGTGAAATGAACTGGGGTCCTCTGTCTGAGACGATGTCTTCGGGAATTCCGTAGTATCTGAACACGTGGTTAAACATAAGTTCAGCTGTCTCCATGGCGGTAGGTAGGCCTGCCAGGGGAATCAGACGACATGACTTGGAGAATCGATCTACGATTACGAGGATGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302341 False 526 lncRNA 0.56 1 7289487 7290012
TU302346 False 561 lncRNA 0.55 1 7289487 7290047
TU302342 False 387 lncRNA 0.54 1 7289626 7290012
TU302345 True 328 lncRNA 0.53 1 7289720 7290047

Neighbor

gene id symbol gene type direction distance location
CI01000063_07252228_07279272 TBKBP1 coding upstream 9089 7252050 ~ 7280398 (+)
CI01000063_07199941_07203985 NA coding upstream 85449 7199097 ~ 7204038 (+)
CI01000063_07197046_07197411 NA coding upstream 91983 7196642 ~ 7197504 (+)
CI01000063_07120937_07121851 CDK5R1B, CDK5R1 coding upstream 166181 7120602 ~ 7125013 (+)
CI01000063_07079516_07080598 UTS2R coding upstream 208138 7079183 ~ 7081349 (+)
CI01000063_07335335_07350224 TBX21 coding downstream 45288 7335335 ~ 7350224 (+)
CI01000063_07372666_07374936 PNPO coding downstream 82619 7372666 ~ 7374961 (+)
CI01000063_07382284_07388874 CDK5RAP3 coding downstream 92237 7382284 ~ 7388915 (+)
CI01000063_07400153_07405739 NFE2L1B, NFE2L1 coding downstream 110106 7400153 ~ 7406600 (+)
CI01000063_07420519_07423734 PHKG2 coding downstream 130359 7420406 ~ 7423976 (+)
G266213 NA non-coding upstream 66291 7222639 ~ 7223196 (+)
G266375 NA non-coding upstream 74391 7214840 ~ 7215096 (+)
G266171 NA non-coding upstream 140096 7128316 ~ 7149391 (+)
G266208 NA non-coding upstream 172170 7115037 ~ 7117317 (+)
G266385 NA non-coding downstream 1442 7291489 ~ 7291743 (+)
G266393 NA non-coding downstream 61771 7351818 ~ 7352187 (+)
G266229 NA non-coding downstream 65333 7355380 ~ 7358646 (+)
CI01000063_07447683_07448277 NA non-coding downstream 153004 7447066 ~ 7448441 (+)
G266195 NA non-coding downstream 174424 7464471 ~ 7467184 (+)
CI01000063_06335618_06338138 HOXB8B other upstream 952127 6335618 ~ 6338283 (+)
G265391 NA other upstream 1370458 5913783 ~ 5919029 (+)
G262436 NA other upstream 4574970 2713615 ~ 2714517 (+)
G262423 NA other upstream 5046522 2241408 ~ 2242965 (+)
G262194 NA other upstream 6144480 1139352 ~ 1145007 (+)

Expression


Co-expression Network