Gene
RNA
| Item | Value |
|---|---|
| gene id | G282811 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000071 |
| NCBI id | null |
| chromosome length | 5214881 |
| location | 4121916 ~ 4131934 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU320538 | True | 1560 | lncRNA | 0.39 | 2 | 4121916 | 4131934 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000071_04113995_04118019 | NA | coding | upstream | 3678 | 4113847 ~ 4118238 (+) |
| CI01000071_04007497_04017876 | NPFFR1L2 | coding | upstream | 103690 | 4007033 ~ 4018226 (+) |
| CI01000071_03942074_03954201 | TET3 | coding | upstream | 167676 | 3941975 ~ 3954240 (+) |
| CI01000071_03901048_03909621 | AP3M2 | coding | upstream | 211279 | 3901048 ~ 3910637 (+) |
| CI01000071_03857495_03897333 | KAT6A | coding | upstream | 224426 | 3857495 ~ 3897490 (+) |
| CI01000071_04163270_04188267 | MXD1 | coding | downstream | 31336 | 4163270 ~ 4190573 (+) |
| CI01000071_04206342_04211122 | NA | coding | downstream | 74277 | 4206211 ~ 4211133 (+) |
| CI01000071_04228627_04229463 | PURBB, PURB, PURBA | coding | downstream | 96693 | 4228627 ~ 4229571 (+) |
| CI01000071_04443263_04450257 | GM10705, UBE2L3, BB_R111_JSM90EE7F, UB2L3, UBE2L3B, UBE2L3.S, UBE2L3A | coding | downstream | 311252 | 4443186 ~ 4451260 (+) |
| CI01000071_04464134_04466967 | SDF2L1 | coding | downstream | 332200 | 4464134 ~ 4467233 (+) |
| G282857 | NA | non-coding | upstream | 17873 | 4008957 ~ 4104043 (+) |
| G282825 | NA | non-coding | upstream | 34842 | 4086377 ~ 4087074 (+) |
| G282798 | NA | non-coding | upstream | 51543 | 4067529 ~ 4070373 (+) |
| G282855 | NA | non-coding | upstream | 116016 | 4005607 ~ 4005900 (+) |
| G282853 | NA | non-coding | upstream | 117490 | 4004194 ~ 4004426 (+) |
| G282894 | NA | non-coding | downstream | 102500 | 4234434 ~ 4241083 (+) |
| G282898 | NA | non-coding | downstream | 118195 | 4250129 ~ 4250341 (+) |
| G282901 | NA | non-coding | downstream | 120621 | 4252555 ~ 4252959 (+) |
| G282903 | NA | non-coding | downstream | 124403 | 4256337 ~ 4257047 (+) |
| G282905 | NA | non-coding | downstream | 125204 | 4257138 ~ 4257693 (+) |
| G282080 | NA | other | upstream | 1065385 | 3056084 ~ 3056531 (+) |
| CI01000071_02815324_02834097 | NA | other | upstream | 1293312 | 2815127 ~ 2835525 (+) |
| CI01000071_01374449_01376813 | NA | other | upstream | 2744246 | 1373996 ~ 1377670 (+) |
| G280443 | NA | other | upstream | 3199820 | 905217 ~ 922096 (+) |
| CI01000071_00792254_00802384 | SLC6A4B, SLC6A4 | other | upstream | 3318599 | 791346 ~ 803317 (+) |
