CI01000075_01526289_01529484 (POLR2E, POLR2EA, POLR2EB)


Basic Information

Item Value
gene id CI01000075_01526289_01529484
gene name POLR2E, POLR2EA, POLR2EB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1526241 ~ 1529656 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000075_01526289_01529484.mRNA
GTTTAAAAGCAGAGTGTTTTAGGACTGTGTGATCAGTAAAACGCGCTAATGGACGATGAGGAGGAGACTTATCGATTATGGAAAATTCGCAAGACCATAATGCAGCTCTGCCATGATCGAGGGTTTCTGGTGACCCAGGATGAGCTGGACCAGACCTTGGATGAATTTAAAGGTCAGTTCGGTGACAGGCCCAGTGAGGGGCGACCCAGACGGACGGATCTCACCGTGCTGGTCGCCCACAACGACGACCCCACCGACCAGATGTTTGTTTTCTTTCCAGAGGAGCCTAAAGTGGGCATCAAGACCATTAAGATGTATTGCCAGCGGATGCAGGAAGAAAACATCACTCGGGCCATTATCGTAGTCCAGACGGGCATGACGCCATCTGCTAAACAGTCTTTAGTTGACATGGCACCAAAATACATCCTGGAACAGTTTCTACAGCAAGAGCTGCTAATAAACATCACAGAGCATGAGCTTTTCTTGACTGTCGTCAGTAAACTGAAGGAGAGCCAGTTACCCAGAATTCAGTCTGGAGATCCCGTGGCACGATATTTTGGGCTGAAACGAGGGCAGGTGGTGAAGATCATCCGACCCAGTGAGACGGCTGGACGATACATCACGTACAGACTTGTACAGTGAAGACCAAGCTTTTATTTTTCTTTAACGTCAAGCTTAGATGTGACGGGCTTTTCACTGCGTCTCATGTTCTTTTGTTTTATAATGGGATTCTTGTGATGGACGGCAACTATTATGAATTTAATTTCCCTAAAACTTGAATTTTGTATTATGTTTGTTTTTGCAAAACAACAAA

Function

symbol description
polr2ea Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).
polr2eb Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).
polr2e Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in nucleoplasm. Part of RNA polymerase II, core complex.

GO:

id name namespace
GO:0001055 RNA polymerase II activity molecular_function

KEGG:

id description
K03013 RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000075_01526289_01529484.mRNA True 814 mRNA 0.46 6 1526241 1529656

Neighbor

gene id symbol gene type direction distance location
CI01000075_01506719_01516006 NA coding upstream 10188 1505543 ~ 1516053 (+)
CI01000075_01466937_01467865 NA coding upstream 58180 1466937 ~ 1468061 (+)
CI01000075_01451280_01460210 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding upstream 64605 1451280 ~ 1461636 (+)
CI01000075_01404076_01444348 UNC13A coding upstream 81831 1404076 ~ 1444410 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 coding upstream 160398 1364122 ~ 1365843 (+)
CI01000075_01609077_01609286 NA coding downstream 79421 1609077 ~ 1610221 (+)
G289329 NA non-coding upstream 1379 1518990 ~ 1524862 (+)
G289397 NA non-coding upstream 9636 1516324 ~ 1516605 (+)
G289390 NA non-coding upstream 22338 1494413 ~ 1503903 (+)
G289340 NA non-coding upstream 59850 1465437 ~ 1466391 (+)
G289398 NA non-coding downstream 697 1530353 ~ 1530598 (+)
G289401 NA non-coding downstream 14007 1543663 ~ 1545087 (+)
G289402 NA non-coding downstream 15827 1545483 ~ 1547588 (+)
G289400 NA non-coding downstream 31635 1561291 ~ 1567304 (+)
CI01000075_00917306_00921588 NA other upstream 603825 917306 ~ 922416 (+)
G288755 NA other upstream 1218320 305108 ~ 316301 (+)
G288708 NA other upstream 1288970 235398 ~ 237271 (+)
G289319 NA other downstream 70525 1600181 ~ 1605306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015989 POLR2E coding NC_007113.7 CM002886.2 56657804 ~ 56671326 (+)
bowfin (Amia calva) AMCG00005967 polr2e,LOC107599482,LOC107669821 coding CM030142.1 CM030142.1 13022361 ~ 13025617 (-)