AMCG00005967 (polr2e,LOC107599482,LOC107669821)


Basic Information

Item Value
gene id AMCG00005967
gene name polr2e,LOC107599482,LOC107669821
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13022361 ~ 13025617 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005967
CAACAACATCGTTTTATGGTCTATTTGGCAAatctatataaacacacacacacacatatttatataatccataataataatgaacaaataaaccTGCCATGAACAGAAAAGTACAGGCTAATCCATTGATACCAGTATAGGGGTCCGTTGGGCAACACGTGATCCCTCTGCGCGGAAGTGCGCTGATTGAAGGattcagagagaaagaaagcgtGTTGCTAGAGTTCCGGAATAAACTACctttttaatcaataaaaacattttcatattaaaacaacaGACATGGATGACGAAGAAGAGACCTACCGACTGTGGAAAATCAGGAAAACAATCATGCAGCTGTGTCACGACCGAGGCTACCTGGTCACCCAGGACGAGTTGGACCAGACCCTGGAGGAGTTTAAGAGCCAATTCGGGGACAAGCCCAGCGAGGGCCGGCCAAGACGAACTGACCTCACGGTGCTGGTGGCCCACAACGACGACCCCACCGACCAGATGTTTGTCTTCTTCCCGGAGGAGCCCAAGGTTGGCATCAAGACCATTAAGATGTACTGCCAGCGCATGCAGGAAGAGAACATCACCCGCGCCATCATCGTGGTGCAGATGGGCATGACCCCCTCTGCCAAGCAGTCCCTGGTAGACATGGCTCCCAAATACATACTGGAGCAGTTTCTCCAGCAGGAGCTGCTCATCAACATCACAGAGCACGAGCTGGTTCCAGAGCACATCGTGATGACCAAAGAGGAAGTCACAGAGCTGCTGGCCCGCAAGCTGAAGGAGAGCCAACTGCCCAGGATCCAGGCTGGAGACCCAGTGGCTCGCTACTTTGGACTCAAGAGAGGACAGGTTTAGTCCTCCTGTGAAGTAGCAGCTGTGAGCGCTGCGTCACCCTTCTGTCCCTGCAGCCCGGCCTGCTTTATCTCAGTTAGTTGTATAGCTGAACAGTGTCGTGCCGCCTGCGTCTGAATGCTGAAGTGGGAAGCTGCCCACGAggcttccttttatttttccaagaaGTTCCTCCtaatttacattcatttgtGCTTTAGGGGATGTGCATTTGTAacttacttttttatatataaaatattaaaacgtGTGTATTGACAAA

Function

symbol description
polr2e Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in nucleoplasm. Part of RNA polymerase II, core complex.

NR:

description
PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03013 RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005967 True 1111 mRNA 0.48 7 13022361 13025617

Neighbor

gene id symbol gene type direction distance location
AMCG00005938 hnrnpm,LOC105900966 coding downstream 131886 12881785 ~ 12890475 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding downstream 141764 12872911 ~ 12880597 (-)
AMCG00006064 NA coding downstream 262918 12746929 ~ 12759443 (-)
AMCG00005990 sppl2b,sppl2 coding downstream 286454 12726847 ~ 12735907 (-)
AMCG00005991 NA coding downstream 299612 12717578 ~ 12722749 (-)
AMCG00005948 NA coding upstream 143460 13169077 ~ 13171020 (-)
AMCG00005947 NA coding upstream 147269 13172886 ~ 13181536 (-)
AMCG00005943 NA coding upstream 214865 13240482 ~ 13244787 (-)
AMCG00005944 NA coding upstream 222137 13247754 ~ 13250688 (-)
AMCG00005945 tmem161a coding upstream 253686 13279303 ~ 13284728 (-)
G155331 NA non-coding downstream 111438 12908694 ~ 12910923 (-)
G155326 NA non-coding downstream 131003 12891107 ~ 12891358 (-)
G155284 NA non-coding downstream 275645 12746423 ~ 12746716 (-)
G155235 NA non-coding downstream 410916 12605723 ~ 12611445 (-)
G155183 NA non-coding downstream 574642 12447520 ~ 12447719 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 2587 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 53868 13079485 ~ 13107493 (-)
G155400 NA non-coding upstream 82195 13107812 ~ 13108067 (-)
G155426 NA non-coding upstream 226505 13252122 ~ 13252489 (-)
G155429 NA non-coding upstream 241346 13266963 ~ 13267162 (-)
AMCG00005936 march2 other downstream 50955 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other downstream 72394 12920123 ~ 12949967 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other downstream 167558 12843765 ~ 12854803 (-)
AMCG00005992 NA other downstream 311225 12678405 ~ 12711136 (-)
AMCG00005989 NA other downstream 346367 12669256 ~ 12675994 (-)
AMCG00005966 sbno2,LOC106573581 other upstream 10807 13036424 ~ 13051719 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other upstream 97940 13123557 ~ 13156318 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other upstream 542850 13568467 ~ 13583351 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other upstream 638447 13664064 ~ 13698534 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 1133514 14159131 ~ 14171607 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015989 POLR2E coding NC_007113.7 CM002886.2 56657804 ~ 56671326 (+)
grasscarp (Ctenopharyngodon idella) CI01000075_01526289_01529484 POLR2E, POLR2EA, POLR2EB coding CI01000075 null 1526241 ~ 1529656 (+)