AMCG00005966 (sbno2,LOC106573581)


Basic Information

Item Value
gene id AMCG00005966
gene name sbno2,LOC106573581
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13036424 ~ 13051719 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005966
ATGGGTGGCTTTTGCATGAAGGCCGCCAATCGCTACAATGCcattgaatGGTTTGGAAAGGCCTTGGACTGCGGTTCGATTGGGTTTGAGGAAAGCTGCACCAGACTGAGCTCTAAACTTACTCACATACAAGCATCGTGCTGCCCGTCTTCTCACACCGCCCCCTTGTTCCCCCAGGATCTCTCCGTCATCGATGAGCTGTCCAACACTTCCCTCTTCTCCTCGCCTGCCGACTCCCTGTCGGAGTACGCGGACACCCAGAACTTCCTGAACCCTGACAACCTGACGCATGTGCCCACACTATGGGACATCAACACGCCCTCCCAGAACCAGAATCAGCCAGAGCTGAATACCAGCAGGTTTCAGGGATTAAGCAGTTTGGAAGATATCTCTGCCATTATCAACACCCCCCCTCTGGGTCCATATCAGCCGCCCCCCCGTgtcgctcctgctgtggaggaggaagaggaagcgGACGATGAGGAGACCGAGGAGCTGGGACATGTGGAGACCTACGCTGACTACAAACCATCAAAATCCACAATAGGAATCTCACACCCGGACATCGTGGTGGAAACGAACACGTTGTCCAGCGTGCCCCCTCCTGACATCACATACACCCTGTCCATTCCCGAAACCACTATCAAGAGCGGACTTCTCTCTGCCCTGCAGCTGGAGGCCATCATATACGCCTGCCAGCAACACGAGGTGATCCTGCAGAACGGCCAGCGGGCGGGCTTCCTGATCGGAGATGGTGCGGGCGTGGGCAAGGGCCGCACGGTGGCTGGCATCATCTTGGAAAACTTCTTAAAGGGAAGAAAGAAAGCATTATGGTTCAGTGTCTCCAACGACCTAAAATACGACGCTGAGAGAGATCTCAAAGACATAGAGGCTCCGAATATCCCTGTGCATGCCTTAAACAAGATTAAGTATGGTGACACAGCTACCTCAGAAGGAGTCCTGTTTGCTACGTACTCGGCGTTGATTGGAGAGAGCCAGGCGGGCGGACAGCACCGAACCAGACTGAAGCAGATCTTAGACTGGTGCAAGCCCGGCTTCGATGGAGTTATTGTGTTTGACGAATGCCATAAAGCCAAAAACGCCACATCCACAAAGATGGGCAAGGCTGTCCTGGACCTGCAGAGCAAGCTGCCGCTGGCCAGGGTGGTGTATGCCAGTGCCACAGGTGCCTCTGAGCCAAAGAACATGATATATATGAGCCGGCTGGGAATCTGGGGGGAGGGGACTCCTTTCAAGACGTTCGATGACTTCCTGCACGCCATCGAGAAAAGGGGAGTGGGCGCCATGGAGATAGTTGCGATGGACATGAAAGTGAGCGGGATGTACATCGCCCGGCAGCTCAGCTTTTCGGGAGTGTCTTTCCGCATCGAGGAGATCAGCCTGGACAACGACTTCATGATGGTCTACAACAAGGCGGCCAGGCTGTGGGCCGAGGCCCTGGCGGTGTTCCAGCGCGCGGCCGACGAGCTGGGCCTGGTCTCCCGCAAGTCCCTGTGGGGTCAGTTCTGGTCATCGCACCAGCGCTTCTTCAAATACCTCTGCATCGCTGCCAAAGTGCGCCGCCTGGTGGAGCTGGCCAAGAAGGAGCTGGTGGCAGGCAAGTGCATTGTGATCGGGCTGCAGTCAACGGGGGAGGCCCGCACGAGAGAAGTCCTGGACGAGAATGATGGGCATCTGGACCGGTTTGTCTCCGCAGCAGAGGGTGTCTTTCAGTCTCTGGTGCTGAAGCACTTCCCGTCCGAGaagcagaagagagagaagggagcCGGGAACAAAAGGAAACGTAAGCCGAAAGGCCGGCAGCAGAAGTACCCAAAGCACTGCATGGAGATCGGGGGCGTTATCAACATCAGCGACGACAGCAGCACCGAGTCGGACGGCCTGGACAGCGACTCCAACTCCTCCCCCGAGTCCCTCCTGGACAACGACGACGTCATCTTCGTCAATCACACTAACTGTCACACTGCAAAACTAGAAGATATGAAGCAAGATCTTCTGGACAAGATTGCAAGCCTCGGAAAGGAACTACCTCTCAACACCCTGGATGAACTGATAGACAAGTTCGGAGGGCCTGAACACGTGTCGGAGATGACAGGGCGGAAGGGGCGTGTGGTCCGGCGGGTGGACGGCAGCGTGAGGTACGAGTCCCGCGCAGAGCAGGGCCTGACCATCGACCACGTCAACATCCGGGAGAAGAAGCGCTTCATGGACGGGGAGAAGCTCGTCGCCATCATCTCGGAGGCGGCCAGCTCGGGGATCTCGCTGCAGGCTGACAAGCGGGTCAAGAATCAGAAGCGCCGAGTCCACATGACCCTGGAGCTGCCCTGGAGCGCCGACCGCGCCATCCAGCAATTCGCGCCCGAGTACATCTTCCTAATCTCGGAGCTGGCAGGGGAAAGACGTTTCGCCTCCATAGTGGCCAAGCGGCTGGAGAGCCTGGGGGCCTTGACTCACGGAGACAGGAGGGCGACGGAGTCCAGAGACCTGAGCAAGTACAACTTTGAAAACAAGTACGGCACCAAGGCGCTGGACAAGATCACCAAAGCCATCCTGGGGCAGATTGAGAGCAAGGTCCCCCCTCCGAAAGGCTACCCAGGTGGCGACGCCATGTTCTTCAGAGACATGAAGCGAGGGATGATGGACGTGGGCATTTTCTGCAAAGAGCCGCGATTTGGCATCAACACAGAGAAAGACTGCAGCATCACCAAGTTCCTCAACCGCATCCTGGGCCTGGAAGTGCACAAACAGAACTCGCTGTTCCAGTACTTCACGGACAACTTTGACTACCTGATCGAGAAGGACAAGAAGGAGGGGAAATACGACATGGGCATTCTAGACCTGGCTCCAGGGAACGATGAGATCTATGAGGAGACGCAGGAGAAGTTTCTGACCTCAGGAAACCCCCAGGACGGGCAGGTGGTGCTGTATAAGATCAGTGTGGATCGAGGAATGAACTGggaagaggcctatggcaaatCTCAGAAACTCGCCGGTCCTGACGAAGGATTCTATCTCTCCTACAGGCTACGGGGGAACCACTCGTGTGTGCTGCTGGCGGAGCAGGGTCGGGGCAGGAACTTCAACCTCTACAAGCCCAACATCGGCAAGCAGGCGCAGCCGGAGAGCCTGGAGAAGCTGCTCAAGAAATACCGCAGGGTGACGCCGGAAGAGGCCCAGGAATCGTGGGAATACCAGTTTAAGTTCTCCTTCCAGAAGTGCAGCCACGCCAACTGGAATGGGAAGTGCAAGCAGATCGAGGAGGGGCACGAGTGCTGGCAGGGCATGCGGCTGCGTCAGTACCACATGCTGTGCGGCGCCCTGCTGCGCGTCTGGAAGAGGGTGGCAGATGTGGTCTCGGACATCACCAGTTCCAGCATCCTGCAGATCGTCCGGCTCAAGACCAAACAGCACAACAAGCAAGTCGGTATCAAGATCCCAGAGAACTGCGTGGCCCGGGTGCGGGACGAACTCACACAGATGGACGAGGAGGTGAAGAGGAGGCGCCGGGAGAGGGAGCAGCGAGCGCAGGAGCAGCGGGCCCTGCAGGAGCAGCGGGCGCAGGAGCAGCGGGCGCAGGAGCAGCGGGCACAGGAGCAGCAGGCCCAGGAGCAGCGGGCGCACAGCTTCCTGCAAAACCTTTACGCCAGGCAGGTGCCCCTTGACCTCTCCAATCCCCATTCCCTGCTATCCAGTCTCCCCGCCATGTCCACTCTGTCCAGCCTGGGCATGCTGCCCCTCAGGAACCACGTCAACTCCTTGGAGGAAATCCTGGACCTCACCACcagcccctcccccaccccagacAGTGGCACGGGGCTGGGCACGACGGGCGCCCTCCCACCGCCGGAGGACTTCAGCTTGGAGTCGTTCATCTCGCACACGCAGCTGAGCAGCctgcacacacaacaacagcagcagcagcagcagcagcagcagcagcagcagcaacagcaagagACCCAGGCGGCTCTGTCTAACCTGTCCACGCAGGACTTCCTGGACGCCTTCTCCTTCGACGACGCGGCCCTGAGCCTCCCGCCCTCCTACCCGCTCTCCACGCAGGCCGCCCCGTCCTCCTCCGCCCCCGCCCCCAGCAAGGCCTCCACGTCCCACCCCACCGCGGCCTCCTCCCCGGTCCCCTTCGCCTCCCCCCTGGCCCCAGCCCAATCGGCGCCCTCGCTGCCCAACGGCCACTGCAGCGGCAGCGACGCCATCAACGTCCGCGAGGTCCTGGACATCATGCTGCGGACCAACCCGGAGCGCCAGTCGGTCATCCAGTTCCGGCTACCCAGCGAGGAGCCTCTGGGTCGGGGCGAGCTGGGGGTGGTGGGGCAGCTGTGTGGCTGCAGGGAAGCGGGGCTGCCGTGTTTGCACGCCCGGGCACAGTGGGATTGCAACTAGGGACCGGAAACGGGAATCAAATCAAGTCTGACGGAAAGACATCTGTAATTCCTGCGGGTCGAGTGCCCGGCAGGACCAGGGAGGCCCATGTGGCTTTCGGAGTCGACCCCAGAGACCGGGAACTAAACTAGGGTCACGTTTTCTTCAAAGTGCTGGTATTTatcatgaatatatatttttttttatttgatttgtaatgAACTTCCTTCCTCACCCCCTGCCCCAGTGTCTGTCCCGACAGCAGGGTCGTCGCTTTGGGTCCGCAGTATACTGTTCTGACGCTCGTAGCCTCGAGAGAGAGAAGTTTCAGTCTAGATTTCAGACACGAGAGAATCTTTCTGAAATGCATTGCTTACTGTGGAAGCAGAATACAGAGTTCAGTGGGCGTCTGAAATCGGAGAAAGTCACGCtgcttgtttttaaacagtagggCTTTCTGTACCagacctgtctgtctgtctgtctgtctgtgtgtgtgcgtctgtccgGGAGGGATAGGACTGTGCCCCTTAGACGTGTAGGAGTGGGTGAGATGTCTGTCGGTTTGAAACTGTTTTAGTTCTTAGTCTTCAAGGCAAAAGAAAGATGTGCTTTTAAACTCCCTCTCCCGTCGGTCTAGTTCACCTGTCTGTGCTTGTTGTCCCCGACGCTCTCCCGTCGAGTTTTGCTCTCTCGTTTTGGTCGGACTACGTCGCCCCCTGCTGGCTAGAGAAGGTTGAGCAGGATATGATGTTAAAAAAGGATTAAGAGCCATAACGCAACCACAATACAAGtccccccacctcctctccGCACTGTTGCGAACTCCTGTCCAAAATGCTTTAGTACGCTTCGGATTCCTCACGTGCGCGGTGTAGACTCAAACTGGACTAAACCCATTTCTCGTGTTCAGAACCAAACCGAACCGAAACGCAAGTGGGACGGAAGTGCCCTCTCGTAATGCAGTCACGCGTGAGCCTGACCTCGGCGACGGCGCGAACACACGTGTGATGCAAAGAAGCAGTATTAAACGTCCCAAGAAAGCAAACCAATAAACCGAAGTTGGATGCACATTGAACCCGACCCGTGTTAAGGTCTTCATACCCAGTAGGTTTAGCCTTACCTCCCATCAGTACTTCTCCACAGTGTGGGgggataaataaatcaataacagcCTCCTTTTTCTCACAGTGCCTTTGGAACATGCTAAGAAATGCAGTCTTTTACTATACTTGTATATATTTCTACTGAAATCAGTGGTATCTTATTTATTGTAGTCGATGTTTTGACACACTAGTGTGTCACCTGACCTGCTCTGCACTGTCTCCGCAGCACCTATCTAAAACCTCAGCTCCTCACTCGCGCTTGGTGGTGAATGGAAACCCAAGCCAAGATCTAGTATTTCATCTCCTTTTTGAAACCTAAAAGAAGGCACACAACTTAGCAATAAAGCAACCGACCTGATAAAGAAAGAGTCAAAGTACTGTTTACGCTTCGAAGAGAAATAACGTCACTTGTTCACAGTAAAACGAATCTCACGACATCACTTTTTTGCGAACGAGTCTCACCTGCTGCAAAGTCACAAAACTTTTGtatagaaagaaacagatataAGTTTTGGGGTCCTTGTGTTAGGACAGTTAAGGTATGTGTTCTTGTAAAAATGGGATAAAAGCAATGTCTTGTGTTATGATTATTGTTTGTTGATGTtatgattataaatattattatttatatttaagggACTTCCTagtggattttgttttagattataATCCTCTTCTGTAGTTAATAcgttacaaaacaaacacaaaaacaaatgtcagggACTtttctagaaaacaaaaattacttaaagaaaaaaattaactatatatataattgatatatacaca
>TU195718
TCCCCCCTGGCCCCAGCCCAATCGGCGCCCTCGCTGCCCAACGGCCACTGCAGCGGCAGCGACGCCATCAACGTCCGCGAGGTCCTGGACATCATGCTGCGGACCAACCCGGAGCGCCAGTCGGTCATCCAGTTCCGGCTACCCAGCGAGGAGCCTCTGGGTCGGGGCGAGCTGGGGGTGGTGGGGCAGCTGTGTGGCTGCAGGGAAGCGGGGCTGCCGTGTTTGCACGCCCGGGCACAGTGGGATTGCAACTAGGGACCGGAAACGGGAATCAAATCAAGTCTGACGGAAAGACATCTGTAATTCCTGCGGGTCGAGTGCCCGGCAGGACCAGGGAGGCCCATGTGGCTTTCGGAGTCGACCCCAGAGACCGGGAACTAAACTAGGGTCACGTTTTCTTCAAAGTGCTGGTATTTatcatgaatatatatttttttttatttgatttgtaatgAACTTCCTTCCTCACCCCCTGCCCCAGTGTCTGTCCCGACAGCAGGGTCGTCGCTTTGGGTCCGCAGTATACTGTTCTGACGCTCGTAGCCTCGAGAGAGAGAAGTTTCAGTCTAGATTTCAGACACGAGAGAATCTTTCTGAAATGCATTGCTTACTGTGGAAGCAGAATACAGAGTTCAGTGGGCGTCTGAAATCGGAGAAAGTCACGCtgcttgtttttaaacagtagggCTTTCTGTACCagacctgtctgtctgtctgtctgtctgtgtgtgtgcgtctgtccgGGAGGGATAGGACTGTGCCCCTTAGACGTGTAGGAGTGGGTGAGATGTCTGTCGGTTTGAAACTGTTTTAGTTCTTAGTCTTCAAGGCAAAAGAAAGATGTGCTTTTAAACTCCCTCTCCCGTCGGTCTAGTTCACCTGTCTGTGCTTGTTGTCCCCGACGCTCTCCCGTCGAGTTTTGCTCTCTCGTTTTGGTCGGACTACGTCGCCCCCTGCTGGCTAGAGAAGGTTGAGCAGGATATGATGTTAAAAAAGGATTAAGAGCCATAACGCAACCACAATACAAGtccccccacctcctctccGCACTGTTGCGAACTCCTGTCCAAAATGCTTTAGTACGCTTCGGATTCCTCACGTGCGCGGTGTAGACTCAAACTGGACTAAACCCATTTCTCGTGTTCAGAACCAAACCGAACCGAAACGCAAGTGGGACGGAAGTGCCCTCTCGTAATGCAGTCACGCGTGAGCCTGACCTCGGCGACGGCGCGAACACACGTGTGATGCAAAGAAGCAGTATTAAACGTCCCAAGAAAGCAAACCAATAAACCGAAGTTGGATGCACATTGAACCCGACCCGTGTTAAGGTCTTCATACCCAGTAGGTTTAGCCTTACCTCCCATCAGTACTTCTCCACAGTGTGGGgggataaataaatcaataacagcCTCCTTTTTCTCACAGTGCCTTTGGAACATGCTAAGAAATGCAGTCTTTTACTATACTTGTATATATTTCTACTGAAATCAGTGGTATCTTATTTATTGTAGTCGATGTTTTGACACACTAGTGTGTCACCTGACCTGCTCTGCACTGTCTCCGCAGCACCTATCTAAAACCTCAGCTCCTCACTCGCGCTTGGTGGTGAATGGAAACCCAAGCCAAGATCTAGTATTTCATCTCCTTTTTGAAACCTAAAAGAAGGCACACAACTTAGCAATAAAGCAACCGACCTGATAAAGAAAGAGTCAAAGTACTGTTTACGCTTCGAAGAGAAATAACGTCACTTGTTCACAGTAAAACGAATCTCACGACATCACTTTTTTGCGAACGAGTCTCACCTGCTGCAAAGTCACAAAACTTTTGtatagaaagaaacagatataAGTTTTGGGGTCCTTGTGTTAGGACAGTTAAGGTATGTGTTCTTGTAAAAATGGGATAAAAGCAATGTCTTGTGTTATGATTATTGTTTGTTGATGTtatgattataaatattattatttatatttaagggACTTCCTagtggattttgttttagattataATCCTCTTCTGTAGTTAATAcgttacaaaacaaacacaaaaacaaatgtcagggACTtttctagaaaacaaaaattacttaaagaa

Function

symbol description
sbno2 Predicted to enable chromatin DNA binding activity and histone binding activity. Involved in several processes, including cellular response to interleukin-6; macrophage activation involved in immune response; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: protein strawberry notch homolog 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005966 True 6296 mRNA 0.55 30 13036424 13051719
TU195718 False 2094 lncRNA 0.47 1 13036459 13038552

Neighbor

gene id symbol gene type direction distance location
AMCG00005967 polr2e,LOC107599482,LOC107669821 coding downstream 10807 13022361 ~ 13025617 (-)
AMCG00005938 hnrnpm,LOC105900966 coding downstream 145949 12881785 ~ 12890475 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding downstream 155827 12872911 ~ 12880597 (-)
AMCG00006064 NA coding downstream 276981 12746929 ~ 12759443 (-)
AMCG00005990 sppl2b,sppl2 coding downstream 300517 12726847 ~ 12735907 (-)
AMCG00005948 NA coding upstream 117358 13169077 ~ 13171020 (-)
AMCG00005947 NA coding upstream 121167 13172886 ~ 13181536 (-)
AMCG00005943 NA coding upstream 188763 13240482 ~ 13244787 (-)
AMCG00005944 NA coding upstream 196035 13247754 ~ 13250688 (-)
AMCG00005945 tmem161a coding upstream 227584 13279303 ~ 13284728 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding downstream 3016 13028204 ~ 13033408 (-)
G155331 NA non-coding downstream 125501 12908694 ~ 12910923 (-)
G155326 NA non-coding downstream 145066 12891107 ~ 12891358 (-)
G155284 NA non-coding downstream 289708 12746423 ~ 12746716 (-)
G155235 NA non-coding downstream 424979 12605723 ~ 12611445 (-)
G155391 NA non-coding upstream 27766 13079485 ~ 13107493 (-)
G155400 NA non-coding upstream 56093 13107812 ~ 13108067 (-)
G155426 NA non-coding upstream 200403 13252122 ~ 13252489 (-)
G155429 NA non-coding upstream 215244 13266963 ~ 13267162 (-)
G155431 NA non-coding upstream 221921 13273640 ~ 13274693 (-)
AMCG00005936 march2 other downstream 65018 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other downstream 86457 12920123 ~ 12949967 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other downstream 181621 12843765 ~ 12854803 (-)
AMCG00005992 NA other downstream 325288 12678405 ~ 12711136 (-)
AMCG00005989 NA other downstream 360430 12669256 ~ 12675994 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other upstream 71838 13123557 ~ 13156318 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other upstream 516748 13568467 ~ 13583351 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other upstream 612345 13664064 ~ 13698534 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 1107412 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 1285172 14336891 ~ 14341603 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021066 SBNO2 coding NC_007133.7 CM002906.2 17691381 ~ 17781213 (-)